Gene LGAS_0780 details

Gene Information

• Locus tag: LGAS_0780
• Symbol: rnc
• ID: 4440029
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus gasseri ATCC 33323
• Kingdom: Bacteria
• Replicon accession: NC_008530
• Strand: +
• Start bp: 759905
• End bp: 760585
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 639672637
• Product: ribonuclease III
• Protein accession: YP_814609
• Protein GI: 116629437
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 47
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 6.30965e-17
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGTTTCAG TAGCTTTTAA AAAAAACTTA AAAGAAAAAT ACGGAATAAA GTTTAATAAC 
GAAAATTTAC TTGAAGATGC ATTTACTCAT TCTTCTTATG CAAATGAACA TCCTGGAAGA 
AAAGATTATG AAAAGCTAGA GTTCTTGGGG GATGCTGTTC TTGAATTAGC TGTATCTGAT 
TATTTGTATC GGCATTTTCC CAGATTAAAT GAAGGCGAAT TAACGAGAAT GCGTTCTAAT 
ATTGTTAGAA CTGAGGGATT TTCTGAATTT GCGATTGAAT GTGGTTTCCC TGCAGAAATT 
AATCTGGGTA AAGGAGAAGA GAAGGCTGGC GCTAGAAAAC GTAAGACCTT ACTTGAAGAT 
GTCTTTGAGG CCTTTAATGG AGCCTTGTTC TTAGATCAAG GAATGCCAGC TGTACAACAT 
TTTTTGCATT TAACAGTTTA TCCTTTGATT GCCGAAGGAG ATTTTAATGC TTCACGTGAT 
TATAAGACTG AGCTTCAAGA ACGTCTGCAA GTAAATGGGC CAGTGAAGAT TGAATATCAA 
GTAATTGCCG AAGATGAATC AAAGCCATCC TTTAAAGTAC AATTACTTGT TAATGATAAA 
AAGATTTCTG AAGGACAAGG CCGCAATAAA AAAGCTGCCG AGCAGCAAGC AGCACAAGCT 
GCATTAGATA AAAATAAATA A 

 

Protein sequence

MVSVAFKKNL KEKYGIKFNN ENLLEDAFTH SSYANEHPGR KDYEKLEFLG DAVLELAVSD 
YLYRHFPRLN EGELTRMRSN IVRTEGFSEF AIECGFPAEI NLGKGEEKAG ARKRKTLLED 
VFEAFNGALF LDQGMPAVQH FLHLTVYPLI AEGDFNASRD YKTELQERLQ VNGPVKIEYQ 
VIAEDESKPS FKVQLLVNDK KISEGQGRNK KAAEQQAAQA ALDKNK