| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0709 |
|---|
| Symbol | |
|---|
| ID | 4440096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 691164 |
|---|
| End bp | 691775 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639672566 |
|---|
| Product | ppGpp synthetase/hydrolase catalytic subunit |
|---|
| Protein accession | YP_814539 |
|---|
| Protein GI | 116629367 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2357] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0000232311 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 118 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATTT ATGGTGGCTA TACCCCAGTT CTAAATAAAT TACTTAATCA GATGCTGGAA
TATTTTAGAA AAGAAAATAA AATTCACCAA GAACAAACCG GTGACAGTCT TTATGAACAT
TTAATTGGTC GAGTTAAGAG ACCAGAAAGC ATGATTGAAA AATGTCAGCG AAAAGAATTA
CCAGTAACTC CAGAATCAGC AATGAAAAAA ATTCGAGACA GCGTTGGAAT TCGGGTTGTC
TGTAATTTCA TTGATGATAT TTATACTTGT ATTAATTTGA TTCAAAATTG GGATGATGTA
GCAATTGTTA AACAAAAAGA CTACATTACT AATGCTAAGC CTAATGGTTA CCGTTCTTAT
CATATGATTT TAGATGTTGA AAGACCTGAA AAAGATATTG AAGGTAATAT TCCTGGTCAC
TACTATGTTG AAGTGCAACT TAGAACGATT GCAATGGACA CTTGGGCAAG TTTAGAGCAT
GAAATGAAGT ATAAGCATAA AATAAAGAAT CCTGAAATGA TTGGTAAAGA GCTAAAGCGA
GTGGCAGATG AATTAGCTTC TTGCGATGTA AGCATGCAGA CTTTGCGTCA TTTGATTAGA
GAGGAAGACT AA
|
|---|
| Protein sequence | MDIYGGYTPV LNKLLNQMLE YFRKENKIHQ EQTGDSLYEH LIGRVKRPES MIEKCQRKEL
PVTPESAMKK IRDSVGIRVV CNFIDDIYTC INLIQNWDDV AIVKQKDYIT NAKPNGYRSY
HMILDVERPE KDIEGNIPGH YYVEVQLRTI AMDTWASLEH EMKYKHKIKN PEMIGKELKR
VADELASCDV SMQTLRHLIR EED
|
|---|
| |