| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0409 |
|---|
| Symbol | groEL |
|---|
| ID | 4438882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 425524 |
|---|
| End bp | 427155 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639672267 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_814252 |
|---|
| Protein GI | 116629080 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0866481 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAG ACATTAAATT TTCTGAAAAT GCAAGACGCT CATTATTAAA GGGTGTTGAT
AAATTAGCAG ACACTGTTAA GACAACTTTA GGACCTAAGG GTAGAAATGT TGTTTTGGAA
AAGAGCTATG GTGCTCCTGA CATTACTAAC GATGGTGTTA CTATCGCTAA GAGTATCGAC
TTAAAAGATC ACTTTGAAAA CATGGGTGCA AAGCTTGTTT CTGAAGCTGC ACAAAAGACT
AACGATATTG CTGGTGACGG TACTACTACT GCTACTGTTT TAACTCAAGC AATTGTTCGT
GAAGGTATGA AGAACGTTAC TGCTGGTGCA AACCCTGTTG GTATTCGTCG CGGTATTGAA
ACTGCAACTA AAGCAGCTGT TGACGAATTA CACAAGATCA GCCACAAGGT AAGCACTAAG
GATGAAATTG CTCAAGTTGC TTCTGTTTCA TCAGCTTCAA CTGAAGTTGG TAACTTAATC
GCTGACGCAA TGGAAAAAGT TGGTCACGAT GGTGTTATCA CAATTGAGGA ATCAAAGGGT
ATTGATACTG AACTTTCAGT AGTTGAAGGT ATGCAATTCG ATCGTGGTTA CTTATCACAA
TACATGGTAA CTGATAACGA TAAGATGGAA GCCGACTTAG ACAACCCTTA CATTTTGATT
ACTGACAAGA AGATTTCTAA CATTCAAGAC ATCTTGCCAT TACTTCAAGA AATTGTTCAA
CAAGGTAAGA GCTTATTAAT CATTGCTGAT GATGTTGATG GTGAAGCTCT TCCAACTCTT
GTTTTGAACA AGATCCGTGG TACTTTCAAT GTTGTTGCTG TTAAGGCTCC TGGCTTTGGT
GACCGTCGTA AGGCAATGCT TGAAGATATC GCTATTTTAA CTGGTGGTAC TGTAATTTCT
TCAGACTTAG GTCTTGAATT AAAGGACACT AAGATTGATC AATTAGGTAA GGCTGGCAAG
GTTACTGTAA CTAAGGACTC AACTACTATT GTTGAAGGTG CTGGCTCAAA GGATGCAATT
AGCGAACGTG TTGACCAAAT CAAGAAACAA ATTGCTGACA CTACTTCAGA CTTTGACCGT
GAAAAGTTAC AAGAACGTCT TGCTAAGCTT GCTGGTGGTG TTGCTGTTAT CAAGGTTGGT
GCTGCTACTG AAACTGAATT GAAGGAAAGA AAGTACAGAA TCGAAGATGC CTTGAACGCA
ACCCGTGCCG CTGTTGAAGA AGGATACGTT GCCGGTGGTG GTACTGCATT AGTTGATGTT
ATGAAGTCCA TCCAAGGTAA TGTTAAGGGT GATTCTCAAG ATGCACAAAC TGGTGTAAAC
ATTGTGATGA AGGCTTTAGG TGCTCCTGTA CGTCAAATCG CTGAAAACGC TGGTAAAGAT
GGTGCTGTTA TCTTAGATCA CTTAGAACAC GAAGACCCAG AAATTGGTTA CAATGCTGCA
ACTGACAAGT GGGAAAACAT GGTTAAGGCT GGTATCATCG ACCCAACTAA GGTAACTCGT
TCAGCACTTC AAAATGCTGC TTCAATTGCT GCCTTGTTGT TAACTACTGA AGCTGTTGTT
GCTGATGCTC CAGAAGATGA CAAGAACCAA GCTCCTGCAG CTCCAAACCC AGGTATGGGA
ATGGGAATGT AA
|
|---|
| Protein sequence | MAKDIKFSEN ARRSLLKGVD KLADTVKTTL GPKGRNVVLE KSYGAPDITN DGVTIAKSID
LKDHFENMGA KLVSEAAQKT NDIAGDGTTT ATVLTQAIVR EGMKNVTAGA NPVGIRRGIE
TATKAAVDEL HKISHKVSTK DEIAQVASVS SASTEVGNLI ADAMEKVGHD GVITIEESKG
IDTELSVVEG MQFDRGYLSQ YMVTDNDKME ADLDNPYILI TDKKISNIQD ILPLLQEIVQ
QGKSLLIIAD DVDGEALPTL VLNKIRGTFN VVAVKAPGFG DRRKAMLEDI AILTGGTVIS
SDLGLELKDT KIDQLGKAGK VTVTKDSTTI VEGAGSKDAI SERVDQIKKQ IADTTSDFDR
EKLQERLAKL AGGVAVIKVG AATETELKER KYRIEDALNA TRAAVEEGYV AGGGTALVDV
MKSIQGNVKG DSQDAQTGVN IVMKALGAPV RQIAENAGKD GAVILDHLEH EDPEIGYNAA
TDKWENMVKA GIIDPTKVTR SALQNAASIA ALLLTTEAVV ADAPEDDKNQ APAAPNPGMG
MGM
|
|---|
| |