| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0215 |
|---|
| Symbol | |
|---|
| ID | 4438741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 247138 |
|---|
| End bp | 248862 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639672075 |
|---|
| Product | neopullulanase |
|---|
| Protein accession | YP_814062 |
|---|
| Protein GI | 116628890 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0425343 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.000179088 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTAG CAGCTTTAAA ACATAGAACT GAAAGTGAAG ACTGTACAGT AATTGATCAC
TCACACGTAA AAATTAGACT TCATACTGCT AAAGACGATG TAAAAAAAGT CTTTGTTCAC
TATATTGATA ACTATTTGCC ACCCGTAGAT GCGGCAACGC TCGAAATGAA AAAGGCAGGT
AGCGGTCAAG TAAACGATTA TTGGACAGCC ACTTTAACAG CACCGTATCA CCGAATCAAG
TATACTTTTG AAGTTATTGG TAATGATGGT AGCCATATTA TTTTTGGTGA TCGTAGTATT
GAAAAATTTA GTGATGAGAA ATTAAGAGAA GATGGCTTAT ATTTTAAAGT GCCATATTTT
CATGATATTG ATCGTATTAA AACTCCTGCT TGGCTCAAAG ATGTTGTCTG GTATCAAATC
TTTCCAGAGC GCTTTGCTAA TGGAGATAAA AGTAATGATC CAGTTAACGT TAAGCCCTGG
AATCCAGAAG ATCATCCCGG CAGAGAAGAT TTTTACGGCG GAGACTTGCA AGGAGTATTG
GATCATTTAG ATGATTTACA AAGGTTAGGG ATTACCGGCT TGTATTTCTG CCCTATTTTT
AAAGCAAGCT CTAATCACAA ATATGACACC ATTGATTATT TACAAGTTGA TCCAGCTTTT
GGCGATAAAG ATTTATTTGC AAAAGTAGTG AATGAAGCTC ACAAGCGCGG GATGAAAGTA
ATGTTAGATG CAGTTTTCAA CCATCTTGGT GACCAATCAA TGCAGTGGCA AGACGTGGTT
AAAAATGGAG CCAAATCCCG CTTTAAAGAT TGGTTTCATA TTAATTCTTA TCCTGTTGAA
CCTTATCGTG ATCCAAGTAA GGGAGAAAAG AATCCGCCTT ATGAAACCTT TGCTTTTGAA
AAGCATATGC CCAAATTAAA TACTGCTAAT CCAGAAGTAC AGGATTTCTT ATTGGAAATT
GCAACTTATT GGGTAAAATA TTTTGATATT GATGCTTGGC GCTTAGATGT AGCAAATGAA
GTTGACCACC ACTTTTGGAA GAGATTCCAC GACGAATTAA TTAAAATTAA GCCAGATTTC
TATATTGTTG GAGAAATATG GCATTCAGCT CGTCCGTGGC TTCAAGGAGA TCAATTTACA
GGTGTAATGA ACTATCCGTA TACTTTGCAA ATTGAGGATC ATTTTTTTAA GCATAAGTTA
GATGGCAAGG AACTTAGCGA ACACTTAACT GATCAATTAA TGATGTATCC AGATATTGTT
AACCAAGCGA TGATGAATAT GCTTGATTCG CATGATACAG CTCGAATTTT GACTTTAGCA
AACGGTAATC AAGATTTAGC TTTACAAGCT ATAGCTTATG AGTTCGTTCA ACCTGGGATA
CCATGTATTT ATTATGGAAC AGAAATGGGG ATGAGCGGCG ATAACGATCC TGATTGTCGT
AAGCCAATGG ATTGGGGTAA GTTAAATGGC CCAGTCTGGA AGAGGGTTTA TGAATTGGTT
AAATTCCGTT TAGACCATCA GGATACTTTA AATCAAGGCG ATGTGAAGTT AACGGTAACA
GAAAATGATC TACTAAAAGT TGAACGAACA GGAAAAGAAA CAATAAATGC CTACTATAAT
ACCAGTGATC ATGATATCAA AATTGATAAA AAACCATCGC TTAGTCAAAA TTATGAAGAT
GGTATTTTGG CGCCAGATGG CTTTTTGGTA GAAGTAAAAG CTTAA
|
|---|
| Protein sequence | MQLAALKHRT ESEDCTVIDH SHVKIRLHTA KDDVKKVFVH YIDNYLPPVD AATLEMKKAG
SGQVNDYWTA TLTAPYHRIK YTFEVIGNDG SHIIFGDRSI EKFSDEKLRE DGLYFKVPYF
HDIDRIKTPA WLKDVVWYQI FPERFANGDK SNDPVNVKPW NPEDHPGRED FYGGDLQGVL
DHLDDLQRLG ITGLYFCPIF KASSNHKYDT IDYLQVDPAF GDKDLFAKVV NEAHKRGMKV
MLDAVFNHLG DQSMQWQDVV KNGAKSRFKD WFHINSYPVE PYRDPSKGEK NPPYETFAFE
KHMPKLNTAN PEVQDFLLEI ATYWVKYFDI DAWRLDVANE VDHHFWKRFH DELIKIKPDF
YIVGEIWHSA RPWLQGDQFT GVMNYPYTLQ IEDHFFKHKL DGKELSEHLT DQLMMYPDIV
NQAMMNMLDS HDTARILTLA NGNQDLALQA IAYEFVQPGI PCIYYGTEMG MSGDNDPDCR
KPMDWGKLNG PVWKRVYELV KFRLDHQDTL NQGDVKLTVT ENDLLKVERT GKETINAYYN
TSDHDIKIDK KPSLSQNYED GILAPDGFLV EVKA
|
|---|
| |