| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_1000 |
|---|
| Symbol | |
|---|
| ID | 4415672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Oenococcus oeni PSU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008528 |
|---|
| Strand | + |
|---|
| Start bp | 934193 |
|---|
| End bp | 937075 |
|---|
| Gene Length | 2883 bp |
|---|
| Protein Length | 960 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 639669201 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_810574 |
|---|
| Protein GI | 116491030 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTATA CTCCATTACA AGTATTCAGC GAATATGATT TGTTAAGAAA CCCTGATTCG
ACGATTGAAC TTGTAAAAGC TCTCAAAAAA AGAGGCTTTC AAGCTGCTGT TTTGGCAAAC
CACGATTATC TTTATGGAGC TGAAAAATTT CGACAGGCTG CAATTTCGGT TAACATTCGA
CCTATTATCG GTTTAACGAT CAGTGATACC GATCATGGTG AAGTAATTTT TGTTTCAAAA
AATTATTCTG GCTATCAGAA TTTGATGAAA ATCAGCACTT ATTTAGCCTT TAATAAAAAT
TCGCAGTTTA TTTTAAAAGA AAATAATTTG GATTTTTCCA ACTTGGCATT GATCTTCCAA
GATGGAAAAG AAACAAAAAT TAAAAATTCA AGCAGCTTTA CTCGAAAAGA ACTTGGCTAT
TTTCCAATCG ATTGGGTTAA GAAGAATGAT TCCGTTACCG CAAGTGCTCT CCAACATATT
GAAAAGAACG AGTTGAATTT TACTGGCAAA TCAGAAATCG TCGGAAAATA TTTAAAAGAT
GAAAATTTCT ATGCAAGTAA TTTACCGGAT GAAATATTAA AAAACAACCA GCACTTTATC
GCTGATATAG TTGATGATTG GCCAAAGAGC GAGAAACATT TACCAATTTT TCCATTACCC
GATTCGGAAA ATAATCCGAA AAAATATTTG AGCAAGTTGG TTAAACTTGG ATTAGAAAAT
CGTTTTAAAA ATAAAGATAT TCCAGAAGCT TATCAGAAAA GAATCGATCG AGAATTGAGG
ACTATTTTCC AATTAGATTT AGCAGATTAC TTTTTGGTAG TCTGGGATAT TATCAATTTT
GCTCGTCACG AAAATATTCA GCTCGGCGCT GGTCGGGGAT CGGCAGTCGG ATCATTGGTA
GCATATGCTC TGTATATAAC GACTATCGAC CCAATTAAAT ATGATCTTTA TTTCGAACGT
TTTTTAAATC CAAAGCGGAT TCAGCTTCCT GACATAGACA TTGATGTGCC AGGCAACAGG
CGCCAGGAAA TTGTTGAATA TCTGCAAAAA AAGTATTCGC TTGATAATTT TTCTCAAATT
GGAACTTTTG ATACTTTTAA AAGAAGATTG GCGGTTCGCG ACAGCGCGAG AATTTTTGCC
AGCAGTGAAG GGACGCTTAA ACGTTTTTCA CGATTTATGG CACAGAATAA TGATGCGTTA
GAAGATGCCG ATCCAAACAA TTTGCCGGAA ACAATTGCAG AGCTTCCAAA TTCTTCGGAA
ATTATTTCCC TGGCACAATC TATTTCCGGG TTGCCCAGAC ATGTTGGAAT ACATGCTGCT
GGAATTGTTT TAAGTCCGGA AAAGCTAGTG AACTATGTTC CTCTGAATCA GGTTTCCGAT
ATCACCGTTA CCCAGTTTGA CAAAGATGAT GTCGAGGCGA TTGGGTTGGT TAAATTCGAT
TTGCTGCGTC TTACCAATTT GGATATGATC GCTGATATTC GATCTTTAAT TCAACAACAT
TATGGAAAAA AATTTAATTT GGATAGTATC GATCTTAACG ACAAAAAAGT TCTTGATTCT
TTTAAAAATC TTCAAACTAA CGGTATTTTT CAATTTGAGT CTGAATCGGC GAAGAGCGCT
CTAAAACAAA TTGCTGTTAG TAGTTTTGAT GATATTGTCG CTGTAAATGC TCTGAATCGT
CCGGGCCCTT CGGAAAATAT TCCAATTTAT GCCCAAGGAA AAAAAGACCC CAATCATATC
GAGATCATCG ATAAAAGTTT GCAAAAAATT CTCCTACCGA CTTACGGTGT AATTATTTAT
CAAGAACAGG TAATGCAGAT TGCGCAGGTT TATGCCGGTT TTACACTTGG AGAAGCGGAT
GTTTTTAGAG CTGCGATTGG ACACAAAAAT GAGGAAAAAC TTTTTGCCCA GCATGATGCC
TTTATTAAAG GGGCAGTTGA AAAGGGCCAT CAACAAGAAC AAGCGGAAGA AATCTTTGCG
TATATAGAGC GCTTTGCCAA TTATGGTTTT AATAAAAGCC ATGCTGTTGC GTATAGCAAA
TTGGCTTTTG AAATGGCTTA TTTAAAAATC TACTTTCCCT TGGAATTCTT CAGTGTTCTC
CTAAATTACG ACACCAAAAA TTCCTATCTG CAGGATATTA AAAATAAAGG CATCAAACTT
TTGGGACCGG ACATTAATCA CGCGGAACGT GGTTTTATAA GCGATAAAGG GGTTATTTAT
GTTGGCCTCG GCAAAATAAA AGGGTTAAAC CGAAAAGTGA TTGATGAAAT TGTCAAAGAA
AGGAATTCGC ACGGATTGTT TTCCGGTCTA ACTGATTTTC TTCAAAGAAT GGCTGGAAGC
GACATCGGTG AAAGTGACAT CGTTCAATTG ACCTATGCTG GTTCGCTCGA TCATTTTGGA
TATAACCGTC AGGAATTAAA AACGAATGCC GCTTCTTTAA TTACTGCAAT GGAATTCGGC
GGCAGCCTTT TAAGCGAAAC GAAAATAAGC GCGATCGGAG AAATGTCTTT ATTAGACCGT
CTTGCGCATG AAAAGGAAGT CCTTGGTTTC ACTATTTCCG GTCATCCAAT TGACAGTCTG
AGAAAGGAAA TTGTTAAAAA AGGATATACG CAGATTAACG ATTTAAAAGC TGACCAAATA
GTCAAAATGG CCGTTATGAT CGATTCGATT CGTACAACTC GCGATAAGAA CGGAAATCAG
ATGGCTTTTG TTTCGATTTC CGACGGCAGC GGAGAAAGTT CTTTAACTGT TTTCGCTCGC
GAATATAGTC AAATGTCGGG TGTTTTGAAG AATGGATCTT TGATTGCTTT AATTGGTAGA
ACTCAATTAA GGAATGGTGA AATTAATATT ATTGCCAATA AGATCCAACA GATCGGCCAT
TGA
|
|---|
| Protein sequence | MSYTPLQVFS EYDLLRNPDS TIELVKALKK RGFQAAVLAN HDYLYGAEKF RQAAISVNIR
PIIGLTISDT DHGEVIFVSK NYSGYQNLMK ISTYLAFNKN SQFILKENNL DFSNLALIFQ
DGKETKIKNS SSFTRKELGY FPIDWVKKND SVTASALQHI EKNELNFTGK SEIVGKYLKD
ENFYASNLPD EILKNNQHFI ADIVDDWPKS EKHLPIFPLP DSENNPKKYL SKLVKLGLEN
RFKNKDIPEA YQKRIDRELR TIFQLDLADY FLVVWDIINF ARHENIQLGA GRGSAVGSLV
AYALYITTID PIKYDLYFER FLNPKRIQLP DIDIDVPGNR RQEIVEYLQK KYSLDNFSQI
GTFDTFKRRL AVRDSARIFA SSEGTLKRFS RFMAQNNDAL EDADPNNLPE TIAELPNSSE
IISLAQSISG LPRHVGIHAA GIVLSPEKLV NYVPLNQVSD ITVTQFDKDD VEAIGLVKFD
LLRLTNLDMI ADIRSLIQQH YGKKFNLDSI DLNDKKVLDS FKNLQTNGIF QFESESAKSA
LKQIAVSSFD DIVAVNALNR PGPSENIPIY AQGKKDPNHI EIIDKSLQKI LLPTYGVIIY
QEQVMQIAQV YAGFTLGEAD VFRAAIGHKN EEKLFAQHDA FIKGAVEKGH QQEQAEEIFA
YIERFANYGF NKSHAVAYSK LAFEMAYLKI YFPLEFFSVL LNYDTKNSYL QDIKNKGIKL
LGPDINHAER GFISDKGVIY VGLGKIKGLN RKVIDEIVKE RNSHGLFSGL TDFLQRMAGS
DIGESDIVQL TYAGSLDHFG YNRQELKTNA ASLITAMEFG GSLLSETKIS AIGEMSLLDR
LAHEKEVLGF TISGHPIDSL RKEIVKKGYT QINDLKADQI VKMAVMIDSI RTTRDKNGNQ
MAFVSISDGS GESSLTVFAR EYSQMSGVLK NGSLIALIGR TQLRNGEINI IANKIQQIGH
|
|---|
| |