| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LACR_0011 |
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| Symbol | |
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| ID | 4432921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactococcus lactis subsp. cremoris SK11 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008527 |
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| Strand | + |
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| Start bp | 14600 |
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| End bp | 18088 |
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| Gene Length | 3489 bp |
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| Protein Length | 1162 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 639665820 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_808070 |
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| Protein GI | 116510854 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATTA TTGAATTTTT TGACCAAAAT TGGCAACTAC AAAAATGGCA ACAAGGTTTT
TCAAAGCGTG AGCGAACTTT ACTGACAGGA TTGTCAGGAA CAGCAAAGAG CTTAGTGATG
GCAAATGCTT ATGAAAATGT TGCTGAGAAA TACATTATTG TTACTGACAG CCAGTTTCAT
GCGAATGAAC TTTATGATGA ACTGTCAACT TTGCTTGGTG AAGAAAAAGT TTTTCAATTT
TTTTCTGATG ATAACATCTA CGCAGAGTTC GCACTTGCAT CTAAAGATCG AGTTGCTTAT
CGACTTGAGG CACTTAATTT CCTACTTGAC GAAAAGTCAA CAGGATTTTT GGTTGTGCCA
TTTTTGGCAT TACGGAGCTA TTTACCAAGT CCCGAAAACT TTTTAGAAAA TTATCTTTTA
CTGACCTCTG GAGATGAATA TGACTTATCA AATTTAGTTA ATTTATTATC AAATGCTGGT
TATGAAAAGA CACAACGCGT GATGACGCCG GGTGAATTTT CAATGCGAGG AGATATCGTT
GATATTTATC CTTTGGACGC GGAAAATCCA GTCCGTTTAG AGTTTTTTGG TGATGAAGTT
GATACGATTC GTTCATTTGA TGTAGAGAGT CAACGTTCAC TGACAAGTCT TGAGCGTTTG
GAAATCTATC CGGCTAGTGA TTTTATTTTG ACTGACAATG AGTTTGATAA GGGTGCAAAA
TCACTGACAG AAATGACAAA TTTGCTGACA GACCCGTCAG CAAAATCATA TATGGAAGAA
GTGATTTCGG CAGCTCAAAA TCACTATTAT CACAAAGACT TACGAAAATT TGCCGAGTAT
TTTTATGATA AAAAAACTTC ACTTTTAAAT TATTTTCCAA AAAATGTTCA AATATTTATT
GATGATTTTC AAAAAGTAAA TGAAATTAAT AATAAGTTAG AAATGGAATT AGCAGATTTC
ATTTTATCTG AAAAAGCAAT GGAAAGAGGT TTTGAAGGGC AGACTTATTT GCTAGATACA
ATGGCAAAAG TTAGAAATTA TAAGCCTGCT ACCTTCTTTT CAAATTTTCA AAAAGGACTT
GGAAATCTCA GATTTGAACA ACTTTATAAT TTCAAACAAC ATTCAATGCA ACAATTTTTC
GGTCAATTAG AACTTTTTTA CACTGAAGTT GAACGATTTA TTAAGCAAGA GTTTACAGTT
GTTTTAGCTG TATCATCAGA AAAGCTCCGT AAATCACTCC ATGAATTAGA TTTAAGTTTA
CAAGAGGTTG ACAGAGAATC TATTCAAGTG GGTAAAGTCA ATCTGATTGA TTTGCAGCTG
TCCAATGGTT TTAATTTTCT TGATGAAAAA TTAGTCGTCA TGACTGAGCA TGAAATATTT
GGCAAAATGC GTAAGAAAAA GGCACGCAAG CTAAATATTA CAAATGCTGA AAGACTCAAA
GATTACAATG AACTCGCGGT TGGTGATTTT GTTGTCCATA AAAATCATGG GATTGGGAAA
TATTTAGGTT TACAAACGCT TGAAGTCGGA GGAATGCATC GTGACTATCT GACCATTCAA
TATCAAAATG GGGATACAAT TTCTGTTCCA GTTGACCACT TAGATTTACT CAGTAAGTAT
ACAGCTGGTG AAGGAAAAAG CCCTAAAATC AACAAATTGA ATGATGGGCG CTGGCGTAAA
ACCATGTCTT CTGTTAGTAA ACAAGTGGAA GATATTTCGG ATGATTTGAT TAAGCTTTAT
GCTGAACGTC AGGCGAAAAA AGGTTTTGCC TTCTCACCAG ACGATGCAAG TCAAGAAGAA
TTTGATTCTG GTTTTTCATA TGTTGAAACG GAAGACCAAA TCCGTTCAAT CAATGAAATT
AAGCATGATA TGGAACTTGA ACGCCCAATG GATCGTTTGT TAGTCGGTGA CGTTGGTTTT
GGTAAGACAG AAGTTGCGAT GCGAGCAGCT TTCAAAGCTA TAAATGATGG GAAACAAGTT
GCAGTCCTTG TGCCAACAAC AGTCCTTGCT GAACAGCATT TCAATAATTT TACCGAACGT
TTTATTAACT TTGGAGTGAA CGTTGAGGTT CTCAGTCGTT TTCAAACCAA AACACAACAA
ACTGAAATTC TAGCTAAATT GAAAAAAGGA CGAGTTGATT TAATTATTGG AACCCACCGT
TTGCTTTCTA AAGATGTTGA ATTTTTTGAT TTAGGTTTGA TGATTATTGA TGAAGAACAA
CGTTTTGGAG TTAAGCATAA AGAGCGTCTG AAAGAATTGA AAACTCAAGT TGATGTTTTG
ACATTGACAG CAACACCTAT TCCTAGGACA CTCCATATGT CAATGCTTGG AATTCGTGAT
TTGTCAGTTA TTGAAACACC ACCAACCAAC CGTTATCCTG TTCAAACCTA TGTCATGGAA
ACAAACTACG GTGTGGTTCG TGATGCCATT TTGAGAGAAA TCTCTCGTGG TGGACAGGTT
TATTATGTTT ACAATAGAGT TGACACTATT GAGCAAAAGG TTTCACAATT AGAAGAATTA
ATCCCCGAAG CTAGAATTGG CTTTATACAT GGTCAAATGA CCGAGGTACA GCTGGAAAAT
ACTTTACTTG CCTTTATTGC TGGCGATTAT GATGTACTTG TTGCAACAAC AATCATTGAA
ACAGGTGTTG ATATTCCAAA TTCTAATACA CTTTTCATCG AAAATGCGGA TATGATGGGC
TTGTCACAAC TTTATCAACT GCGCGGTCGT GTGGGACGTT CAAATCGGGT GGCTTATGCT
TACTTTATGT ATCGACCTGA AAAGATATTA TCAGAAGTTT CGGAAAAACG TTTAGAAGCA
ATTAAAGGCT TTACTGAATT AGGTTCAGGT TTCAAGATTG CTATGCGTGA TTTGTCTATC
CGTGGGGCTG GTAATTTACT TGGGAGTGAA CAATCAGGAT TTATTGATTC TGTCGGTTTT
GATTTGTATT CACAACTCTT AGAAGAGGCT ATTCATACCA AACTTGGCAC AAGTAAGCAA
AAACGGACCT CAAATGTGGA AATTTCTTTG GAATTGGATG CCTTTATTCC TGCCTATTAC
ATCTCTGATG AACGTCAAAA AATTGAAATT TATAAACGAA TTCGTCAGAT TGATAGTCGT
GAGATTTATG AAGAACTACA AGAAGAATTG GTTGACCGTT TTGGAGAATA TCCAGATGAA
GTCGCTTATC TTCTCGAAAT TGGTTTATTG AAACATTTTG CTGACAATGC TCTGGTCGAA
AAAATTGAGA AATCTCGATT TGAAATAACT GTCACTTTAG AAAAAGTAGC TAATACAACC
TATGATCCAC AAGATTATTT TAAGGCTTTG GCCAAAACAA GCATGAAAGC TTCTGTCGGT
GAAAAATATG GCAAAATGAC TTTCCGCTTG AAAATAGAAA ATAGAAATTC CGTTGTGCTT
TTGAGTGAGA TAATGAATTT TGTAGAAGAA TTATCAACAA TAAGAGATAG TTATGATAAA
GTTCGCTAA
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| Protein sequence | MNIIEFFDQN WQLQKWQQGF SKRERTLLTG LSGTAKSLVM ANAYENVAEK YIIVTDSQFH
ANELYDELST LLGEEKVFQF FSDDNIYAEF ALASKDRVAY RLEALNFLLD EKSTGFLVVP
FLALRSYLPS PENFLENYLL LTSGDEYDLS NLVNLLSNAG YEKTQRVMTP GEFSMRGDIV
DIYPLDAENP VRLEFFGDEV DTIRSFDVES QRSLTSLERL EIYPASDFIL TDNEFDKGAK
SLTEMTNLLT DPSAKSYMEE VISAAQNHYY HKDLRKFAEY FYDKKTSLLN YFPKNVQIFI
DDFQKVNEIN NKLEMELADF ILSEKAMERG FEGQTYLLDT MAKVRNYKPA TFFSNFQKGL
GNLRFEQLYN FKQHSMQQFF GQLELFYTEV ERFIKQEFTV VLAVSSEKLR KSLHELDLSL
QEVDRESIQV GKVNLIDLQL SNGFNFLDEK LVVMTEHEIF GKMRKKKARK LNITNAERLK
DYNELAVGDF VVHKNHGIGK YLGLQTLEVG GMHRDYLTIQ YQNGDTISVP VDHLDLLSKY
TAGEGKSPKI NKLNDGRWRK TMSSVSKQVE DISDDLIKLY AERQAKKGFA FSPDDASQEE
FDSGFSYVET EDQIRSINEI KHDMELERPM DRLLVGDVGF GKTEVAMRAA FKAINDGKQV
AVLVPTTVLA EQHFNNFTER FINFGVNVEV LSRFQTKTQQ TEILAKLKKG RVDLIIGTHR
LLSKDVEFFD LGLMIIDEEQ RFGVKHKERL KELKTQVDVL TLTATPIPRT LHMSMLGIRD
LSVIETPPTN RYPVQTYVME TNYGVVRDAI LREISRGGQV YYVYNRVDTI EQKVSQLEEL
IPEARIGFIH GQMTEVQLEN TLLAFIAGDY DVLVATTIIE TGVDIPNSNT LFIENADMMG
LSQLYQLRGR VGRSNRVAYA YFMYRPEKIL SEVSEKRLEA IKGFTELGSG FKIAMRDLSI
RGAGNLLGSE QSGFIDSVGF DLYSQLLEEA IHTKLGTSKQ KRTSNVEISL ELDAFIPAYY
ISDERQKIEI YKRIRQIDSR EIYEELQEEL VDRFGEYPDE VAYLLEIGLL KHFADNALVE
KIEKSRFEIT VTLEKVANTT YDPQDYFKAL AKTSMKASVG EKYGKMTFRL KIENRNSVVL
LSEIMNFVEE LSTIRDSYDK VR
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