Gene PA14_50040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_50040 
Symbol 
ID4380074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp4447842 
End bp4448621 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content71% 
IMG OID639326595 
Producttranscriptional regulator 
Protein accessionYP_792160 
Protein GI116049038 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.101345 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.0268029 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGCGCT ATCCCTACGA ACGGGTCGAG GATCCCGATC TCGCCCGCTG CCCGGTGGTC 
GGCCTCGAGG TCGACAGCAC CGGCCACCGC AGCGACTGGC ATTGCCACCG GCGCGCGCAG
TTGCTGTACA TGGCGGCCGG TAGCGTCACG CTGTATTTCG CCGAGCGCAT TTGCCAATTG
ACGTCGCTCC AGGCCGCCTG GCTGCCGGCC GGCGTGCCGC ATCGCACGGT CCTTCACGGG
CGCTTCGCCT ACCGTAGCCT GTACTTCGAA CCCTCGGCGT TCGCCGAGCT GCCGGACAGC
GTCCAGGTCC TCGAGGTCGG GCCGCTAATG CGCGAACTGA TTCTGCGCAT GACCGGCTGG
GCAGCCGACT TGCAATTGGA AGGGCCGCAC CTGACGCTGT TGCGCGCACT GTTCGATGAA
CTGGCGAGCG CGCCGGCACA CGCCGCGAGC CTGCCGATGC CGCGCGATGC GCGGGCGCTG
AAGGTGGCCG AGGCGCTGCT GGCGCAACCC GCGCTGGACT GGAGCATCGA GGCGTGGGGA
CGTGAGGTCG GCGCCAGCGG GCGGACCCTG GCGCGTCTGT TCACCGAGCA GACCGGCCTG
GGTTTCTCCC GCTGGCGAAC CCAGGCGCGC TTGTTCGAAG CGCGGAGGCG CCTGGCCGAA
GGCCGCTCGG TGACCGAGGT CGCCCACGCC CTGGGCTACG CCAGCGACAG CGCGTTCATC
GCCATGTACC GGCGGGTCTG CGGGCAGTCG CCGGGGCGCG CCCTGCGTGG CCTCGAATGA
 
Protein sequence
MPRYPYERVE DPDLARCPVV GLEVDSTGHR SDWHCHRRAQ LLYMAAGSVT LYFAERICQL 
TSLQAAWLPA GVPHRTVLHG RFAYRSLYFE PSAFAELPDS VQVLEVGPLM RELILRMTGW
AADLQLEGPH LTLLRALFDE LASAPAHAAS LPMPRDARAL KVAEALLAQP ALDWSIEAWG
REVGASGRTL ARLFTEQTGL GFSRWRTQAR LFEARRRLAE GRSVTEVAHA LGYASDSAFI
AMYRRVCGQS PGRALRGLE