| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_37900 |
|---|
| Symbol | |
|---|
| ID | 4382347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 3380385 |
|---|
| End bp | 3382925 |
|---|
| Gene Length | 2541 bp |
|---|
| Protein Length | 846 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639325612 |
|---|
| Product | putative TonB-dependent receptor |
|---|
| Protein accession | YP_791181 |
|---|
| Protein GI | 116050006 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00691809 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.333573 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGACCG GCTCGCGGAT TCCCCGCGCC CAGCAGGAAG GGCCGTCGCC GGTCACGGTG
ATCAGCAGCG AGGAAATCCA GAACCGTGGC TACCGCAACG TCTTCGAGGC CTTGCAGACG
CAGACCCAGA ACACCGGCAT GACCCAGGGC GAGGACTACG GCAACACCTG GCAACCGGCG
GCCAACGCCC TCAACCTGCG CGATCTCGGC CCCAACCACA CGCTGGTGCT GATCAACGGC
CGGCGCGTCG CCGACTACCC GACCGCCTAT GGCGGCTCGG TGAACTTCAC CAACCTGGCG
AACATCCCGG CGGTCATGAT CGACCGCATC GAGATCCTCA GCGGCGGCGC CTCGGCGATC
TACGGCTCGG ATGCCATCGC CGGGGTGGTC AATATCGTCC TGAAGAAGAA ATTCGATGGC
GTCGACGTCA ACCTGCGCGC CGGCACCACC GAGCGCGGCG GCGGCGACAA CCAGCGCCTG
CAACTGGTCG GCGGCGGCGC GACGGGCGAC TTCGAAGGTC TGTTCGGCCT GCAGGTCGAG
CAGCGCCAGC CGGTCTGGGC CAACCAGCGC GGTTTCATGG ACAGCTACCC GGACGGCAAC
AACGTCGGTT ACCGGCTGAA CCCGCAGAGC GGACGCTACC TCGGCGACGC CTCCTGCGCC
GGCCTCGGCG GCCTGTTCGG CGGCAACGTG GCGCCGGTGC CGGGCGCCAG GGGGGGCTAT
CGCTGCATGA CCGACCAGTA CTACAACAAC TACTGGACCC TGCAGACCAA GAAGGAAAAC
TACGACGGCT ACGCCGGCGG CACCTGGCAC CTGAGCGACA GCGGCAAGCT GTTCGCCGAC
CTGCTGTTCG GCTTCGACCA CCTGCAGAAC AATACCCGCG GGCCGTCCTT CACCTCGCCG
GACTTCATCA ATGCCTCCAG CGGCGACCTG GAGCGCTGGT ACCGGCTGTT CTCGCCCGAG
GAGATCGGCG GCAAGAGCAG CAACAACAGC AAGTGGCGCG AGGTGTCCTG GACCGGCACC
CTCGGCTACA GCGACCGCGT CGCCAATACC TCCTGGGAAT ACGAACTGGC CGCGACCCGC
TCCGAGTACC GCAGCGACCG CACTACCCGC TACACCCCGG CGGCCGGGAT CCTCGACCTG
TACCTGGGCC GCAAGCTCGG CGAACGCGAT GGCTACCCGG TCTACGATCC CGATCCGGCG
CGCCTCGGAC GTCCGCTGAG CGAGGAAGAA TGGCGCAGCC TGCGGCGCAA CGTGACCCAG
CACAGCGAGT CCTACTCGCA GACCTACAGC TTCACCGGCA ACGGCGAGCT GTTCGACCTG
CCGGCCGGCC CGGTGGCCTT CGCCGGCGTG CTGGAGGTGG GCAAGCAGGG CTACAGGATC
CGCCCCGATT CGCAATACAA CGACGGCTCC CTCTACAACG TCTCCAAGGC CAGCAGCTCC
GGCGGCTCGC GCGACCGTTA CGCCGCCGGC GGCGAATTCA GCATCCCGCT GCATGACACG
CTGCTGGCGT CCGCCGCCGG CCGCTGGGAC CAGTACAGGT TCAGCGGTCG CACCGAGGAG
CAGACTACCT ACAACCTGGG GCTGGAGTGG CGCCCGCTGA CCAGCCTGCT GCTCCGCGGC
AGCTACGGCA CCAGCTTCCG CGCGCCGGAC CTGAACTACA TCTACCAGGC CGACGCCAAC
GGCTACTACC CGGCGCAGAA GGACTACTAC GGTTGCGAGA AAGGCGTCGA CGGCGCTTGC
AAGAACGGTC GGGTCGACTA CGTGCAGAGC GGCACGCCCG ACCTGAAGTC CGAGCGCGGG
CGCTACTGGA GCTACGGCTT CGTCTGGTCG CCGTCGAGCA GGTTCGACTT TTCCGCCGAC
TACTACCACA TCCAGATCGA CGACCTGCTG ACCACCCTCG ACCCGGACAA ACTGCTGCGC
GACGAGGCGG CCTGCCGCAG CGGCGGGCTC GATCCGGACT CGGCGCAGTG CCGCGACACC
CTGGCGCGGG TCGAACGCAA CGCCGGCGAC GCCAGCGTCG ATCCGAATCG CCTGAACAAG
GTCTACGTCA ATGCCATCAA CGCGGCCAAG GAGCGCACCA GCGGCATCGA CCTGCGCAGC
AACATCCGCT GGGGCGCCGG TGACTACGGC GCGTTCTCCT CGACCCTCGG CTACACCCTG
GTGTTGTCCC ACGACTACCA GCAGTCCGAC GACTACCCCA GCGAGAACCA GCGCGACAGC
CTCGACTCCC ACGACTGGCG CAGCAAACTC AACGCCAGCC TGACCTGGGA CTACGCACAG
TTCACCTCGA CGCTCTTCGC GGTGCGCTAC GGCAGCGTTA CCAACGCCGC TGGCAGCGGG
CGCCTGAGCC CGTGGACGGT GTTCAACGCC AGCGCCCGCT ACCGGCTCAA CGAACGCGCC
AGCGTCGGCC TGACGGTGAA CAACCTGCTC GACCAGATCA AGGAGGACGA CTCCGATGGC
TGGCCGTACT ATCCCACCGG CAACTACGAC GCCATGGGCC GCCAATGGTG GCTGGACTTC
AGCTATCACT TCGGTGGTTG A
|
|---|
| Protein sequence | MVTGSRIPRA QQEGPSPVTV ISSEEIQNRG YRNVFEALQT QTQNTGMTQG EDYGNTWQPA
ANALNLRDLG PNHTLVLING RRVADYPTAY GGSVNFTNLA NIPAVMIDRI EILSGGASAI
YGSDAIAGVV NIVLKKKFDG VDVNLRAGTT ERGGGDNQRL QLVGGGATGD FEGLFGLQVE
QRQPVWANQR GFMDSYPDGN NVGYRLNPQS GRYLGDASCA GLGGLFGGNV APVPGARGGY
RCMTDQYYNN YWTLQTKKEN YDGYAGGTWH LSDSGKLFAD LLFGFDHLQN NTRGPSFTSP
DFINASSGDL ERWYRLFSPE EIGGKSSNNS KWREVSWTGT LGYSDRVANT SWEYELAATR
SEYRSDRTTR YTPAAGILDL YLGRKLGERD GYPVYDPDPA RLGRPLSEEE WRSLRRNVTQ
HSESYSQTYS FTGNGELFDL PAGPVAFAGV LEVGKQGYRI RPDSQYNDGS LYNVSKASSS
GGSRDRYAAG GEFSIPLHDT LLASAAGRWD QYRFSGRTEE QTTYNLGLEW RPLTSLLLRG
SYGTSFRAPD LNYIYQADAN GYYPAQKDYY GCEKGVDGAC KNGRVDYVQS GTPDLKSERG
RYWSYGFVWS PSSRFDFSAD YYHIQIDDLL TTLDPDKLLR DEAACRSGGL DPDSAQCRDT
LARVERNAGD ASVDPNRLNK VYVNAINAAK ERTSGIDLRS NIRWGAGDYG AFSSTLGYTL
VLSHDYQQSD DYPSENQRDS LDSHDWRSKL NASLTWDYAQ FTSTLFAVRY GSVTNAAGSG
RLSPWTVFNA SARYRLNERA SVGLTVNNLL DQIKEDDSDG WPYYPTGNYD AMGRQWWLDF
SYHFGG
|
|---|
| |