| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_33340 |
|---|
| Symbol | |
|---|
| ID | 4380486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 2931455 |
|---|
| End bp | 2934685 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639325249 |
|---|
| Product | helicase |
|---|
| Protein accession | YP_790818 |
|---|
| Protein GI | 116050365 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR02562] CRISPR-associated helicase Cas3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.0278581 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCC TGCTGGTGTC GCAATGCGAA AAGCGCGCCC TGAGCGAAAC CCGCCGCATT
CTCGACCAGT TCGCCGAGCG CCGCGGCGAA CGGACCTGGC AAACGCCCAT CACTCAAGCC
GGACTGGATA CCCTGCGACG CCTGCTGAAG AAAAGCGCAC GGCGCAACAC CGCCGTAGCC
TGTCACTGGA TCCGCGGCCG CGACCACAGC GAACTGCTGT GGATCGTCGG TGATGCCAGC
CGCTTCAACG CCCAGGGTGC GGTGCCGACC AACAGGACCT GCCGCGACAT CCTGCGCAAG
GAAGACGAGA ACGACTGGCA CAGCGCCGAG GACATCCGCC TGCTGACGGT GATGGCAGCG
CTGTTCCACG ATATCGGCAA GGCCAGCCAG GCCTTCCAGG CCAAACTGCG GAACCGCGGC
AAACCGATGG CCGATGCCTA TCGTCACGAA TGGGTATCAC TGCGCCTGTT CGAAGCCTTC
GTTGGCCCAG GCAGCAGCGA CGAGGACTGG CTGAGGCGCC TGGCGGACAA GCGAGAGACG
GGCGATGCCT GGCTGTCGCA ACTGGCCAGG GACGACCGGC AATCCGCGCC ACCCGGCCCG
TTCCAGAAAA GCCGGCTACC GCCGCTCGCC CAGGCGGTCG GCTGGTTGAT CGTCAGCCAT
CATCGCCTGC CCAACGGGGA CCATCGCGGC AGCGCCTCGC TGGCACGCTT GCCGGCCCCC
ATCCAGAGCC AATGGTGCGG CGCACGCGAC GCAGACGCAA AAGAAAAGGC CGCCTGCTGG
CAGTTCCCCC ACGGCCTGCC CTTCGCCAGC GCCCATTGGC GCGCCAGGAC AGCGCTATGC
GCGCAGAGCA TGCTCGAGCG TCCCGGCCTG CTGGCTCGGG GACCGGCCTT GTTGCATGAT
TCCTACGTCA TGCATGTGTC CCGACTGATC CTGATGCTCG CGGACCACCA CTATTCCAGT
CTCCCTGCCG ACTCCCGGCT GGGCGACCCG AACTTCCCCT TGCACGCCAA CACCGACCGG
GACAGCGGCA AACTAAAGCA GCGCCTGGAC GAACACCTGC TCGGCGTCGC CCTGCACAGT
CGCAAGCTCG CCGGCACCCT GCCACGCCTG GAGCGACAAC TACCGCGCCT TGCCCGGCAC
AAGGGCTTCA CCCGCCGGGT CGAGCAGCCG CGCTTCCGCT GGCAGGACAA GGCCTACGAC
TGCGCGATGG CCTGCCGCGA GCAGGCTATG GAGCATGGAT TCTTCGGCCT CAACCTGGCG
TCGACCGGTT GCGGTAAGAC CCTCGCCAAC GGCCGTATCC TGTATGCGCT GGCCGATCCG
CAACGCGGCG CGCGTTTCAG CATCGCTCTC GGCCTGCGCA GCTTGACCCT GCAAACCGGG
CAGGCCTACC GCGAGCGGCT CGGCCTGGGC GACGACGACC TCGCTATCCT GGTCGGCGGC
AGCGCCGCCC GCGAACTGTT CGAAAAGCAG CAGGAGCGCC TGGAGCGCAG CGGTAGCGAG
TCAGCCCAGG AGCTGCTGGC GGAAAACAGC CATGTACACT TCGCCGGCAC GCTCGAGGAC
GGCCCTCTAC GCGAGTGGCT CGGCAGGAAC AGCGCGGGAA ACCGCCTACT CCAGGCGCCC
ATCCTGGCCT GCACCATCGA CCACCTGATG CCCGCCAGCG AAAGCCTGCG CGGCGGACAC
CAGATAGCGC CACTGCTCCG CCTGATGACT TCCGACCTGG TGCTCGACGA GGTCGACGAC
TTCGATATCG ACGACCTGCC CGCCCTGTCG CGGCTGGTGC ACTGGGCCGG CCTGTTCGGC
AGCCGCGTGC TGCTCTCCTC CGCGACCCTG CCGCCGGCCT TGGTGCAGGG CCTGTTCGAG
GCCTATCGCA GCGGCCGGGA AATCTTCCAG CGCCATCGTG GCGCTCCCGG ACGCGCTACG
GAAATCCGCT GTGCCTGGTT CGACGAGTTC TCCAGCCAAT CCAGCGCCCA CGGCGCCGTA
ACCTCCTTCA GCGAAGCGCA TGCGACCTTC GTCGCCCAGC GTCTGGCGAA GCTCGAGCAA
CTGCCGCCAC GTCGCCAGGC GCAGCTATGC ACCGTGCATG CCGCTGGCGA GGCCCGTCCC
GCGCTGTGCC GCGAGTTGGC CGGGCAGATG AATACCTGGA TGGCTGACCT GCATCGCTGC
CATCACACCG AACACCAAGG ACGTCGCATC AGTTTCGGCC TGCTACGGCT GGCCAACATC
GAACCCCTGA TCGAACTGGC CCAGGCCATC CTCGCCCAGG GTGCGCCCGA GGGGTTGCAT
GTCCATCTGT GTGTCTACCA TTCGCGGCAT CCCCTTCTGG TCCGCTCGGC CATCGAGCGA
CAACTCGATG AACTGCTGAA GCGTTCGGAC GACGACGCCG CCGCGCTGTT CGCTCGTCCG
ACGCTGGCCA AGGCGCTCCA GGCCAGCACG GAGCGGGATC ATCTGTTCGT CGTACTCGCC
TCGCCGGTGG CGGAGGTCGG TCGCGACCAC GATTACGACT GGGCCATCGT CGAACCCTCC
TCCATGCGCT CGATCATCCA GTTGGCCGGG CGAATCCGCC GCCATCGCTC CGGCTTCAGC
GGCGAGGCCA ACCTATACCT GCTATCGCGC AATATCCGCT CGCTGGAAGG GCAGAATCCG
GCGTTCCAGC GGCCCGGCTT CGAGACCCCC GACTTCCCTC TTGACAGCCA CGACCTGCAC
GACCTGCTCG ACCCCGCCCT ACTCGCCCGC ATCGACGCCA GCCCACGAAT CGTCGAACCG
TTCCCACTGT TCCCACGCAG CCGGTTGGTC GACCTGGAAC ACCGACGCCT GCGCGCGCTG
ATGCTTGCCG ACGACCCACC GTCGTCCCTG CTCGGCGTAC CGCTCTGGTG GCAAACCCCG
GCATCGCTCA GCGGCGCCCT GCAAACCAGC CAACCATTTC GCGCAGGCGC CAAGGAGCGA
TGCTACGCCC TGCTGCCGGA CGAGGACGAC GAGGAGCGCT TGCATTTCAG CCGCTACGAA
GAAGGGACCT GGAGCAACCA GGACAACCTG TTGCGCAACC TCGACCTCAC CTATGGCCCG
CGCATCCAGA CATGGGGCAC GGTCAACTAT CGGGAGGAGC TAGTCGCAAT GGCCGGCCGC
GAGGACCTCG ACCTGCGTCA ATGCGCCATG CGCTACGGCG AGGTGAGATT GCGAGAAAAC
ACCCAGGGAT GGAGCTACCA CCCTTATTTG GGGTTCAAGA AATACAACTG A
|
|---|
| Protein sequence | MNILLVSQCE KRALSETRRI LDQFAERRGE RTWQTPITQA GLDTLRRLLK KSARRNTAVA
CHWIRGRDHS ELLWIVGDAS RFNAQGAVPT NRTCRDILRK EDENDWHSAE DIRLLTVMAA
LFHDIGKASQ AFQAKLRNRG KPMADAYRHE WVSLRLFEAF VGPGSSDEDW LRRLADKRET
GDAWLSQLAR DDRQSAPPGP FQKSRLPPLA QAVGWLIVSH HRLPNGDHRG SASLARLPAP
IQSQWCGARD ADAKEKAACW QFPHGLPFAS AHWRARTALC AQSMLERPGL LARGPALLHD
SYVMHVSRLI LMLADHHYSS LPADSRLGDP NFPLHANTDR DSGKLKQRLD EHLLGVALHS
RKLAGTLPRL ERQLPRLARH KGFTRRVEQP RFRWQDKAYD CAMACREQAM EHGFFGLNLA
STGCGKTLAN GRILYALADP QRGARFSIAL GLRSLTLQTG QAYRERLGLG DDDLAILVGG
SAARELFEKQ QERLERSGSE SAQELLAENS HVHFAGTLED GPLREWLGRN SAGNRLLQAP
ILACTIDHLM PASESLRGGH QIAPLLRLMT SDLVLDEVDD FDIDDLPALS RLVHWAGLFG
SRVLLSSATL PPALVQGLFE AYRSGREIFQ RHRGAPGRAT EIRCAWFDEF SSQSSAHGAV
TSFSEAHATF VAQRLAKLEQ LPPRRQAQLC TVHAAGEARP ALCRELAGQM NTWMADLHRC
HHTEHQGRRI SFGLLRLANI EPLIELAQAI LAQGAPEGLH VHLCVYHSRH PLLVRSAIER
QLDELLKRSD DDAAALFARP TLAKALQAST ERDHLFVVLA SPVAEVGRDH DYDWAIVEPS
SMRSIIQLAG RIRRHRSGFS GEANLYLLSR NIRSLEGQNP AFQRPGFETP DFPLDSHDLH
DLLDPALLAR IDASPRIVEP FPLFPRSRLV DLEHRRLRAL MLADDPPSSL LGVPLWWQTP
ASLSGALQTS QPFRAGAKER CYALLPDEDD EERLHFSRYE EGTWSNQDNL LRNLDLTYGP
RIQTWGTVNY REELVAMAGR EDLDLRQCAM RYGEVRLREN TQGWSYHPYL GFKKYN
|
|---|
| |