| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_11060 |
|---|
| Symbol | cupB1 |
|---|
| ID | 4382075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 956812 |
|---|
| End bp | 957381 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639323445 |
|---|
| Product | putative fimbrial subunit CupB1 |
|---|
| Protein accession | YP_789034 |
|---|
| Protein GI | 116052122 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.34054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGT TCAAACGTGC AATTCTTGCG CCCCTCGTTG CGTCGGGCAC CCTTCTCGCG
CTGATGTCCC CCGCGGCCCA TGCGGTCGAT GGGATCGTCA ACTTCTCGGG CAACATCACC
GACGTCGCGT GCGATATCAA CGGCCAGGCG CCGGGTGCGG GCAACGTCAC CAACGTCGAC
CTGGGTATCG TGGCGCCGAC CCATTTCACC GCCGTCGGAA CCAACTCCAC TTTCCAGGAG
TTCGATCTGG TCCTCTCCGG TGCCGGCTGC ACCAATGACA AGAAGGTTTC CATCGCCTTC
GATACGGTCA CCAACGTCGA CCGCATCAGC GGCAACCTGA TGCTGATGGG GCCGTCGAAA
GCCAAGGGCG TGCAGATCCA GATCTTCAAC AATTCGGCGG CCAACACCAC GAAGATCCCG
CTGGGCTTGG TCGAGGCCGC CCCGCAGAAG GCAACCATCG ACAAGAACAC GGCGACCCTG
AAGTACAAGG CCTCCTATGT GTCCACCGAG AAGACCGTGA TCGCGGGTAC CGGCCTGTCC
CATATCCGCT ACCTCCTGGC GTACGAGTAA
|
|---|
| Protein sequence | MNKFKRAILA PLVASGTLLA LMSPAAHAVD GIVNFSGNIT DVACDINGQA PGAGNVTNVD
LGIVAPTHFT AVGTNSTFQE FDLVLSGAGC TNDKKVSIAF DTVTNVDRIS GNLMLMGPSK
AKGVQIQIFN NSAANTTKIP LGLVEAAPQK ATIDKNTATL KYKASYVSTE KTVIAGTGLS
HIRYLLAYE
|
|---|
| |