| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6569 |
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| Symbol | |
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| ID | 4315473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | + |
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| Start bp | 1254260 |
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| End bp | 1256086 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638154413 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_778447 |
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| Protein GI | 115361310 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.923475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACAG TGGCGGATTT CATCGTCGAA CGGCTGTACG ACTGGGGCGT GCGCCGCGTG
TACGGCTACC CGGGCGACGG CATCAACGGC TTTTTCGGCG CGCTCAGCCG CGCCGAGGGC
AAGATCGAAT TCATCCAGGC GCGCCACGAA GAGATGGCCG CCTTCATGGC GTCCGCGCAT
GCAAAATTTA CAGGCGAGCT CGGCGTGTGC GTCGCGACCT CGGGCCCCGG CGCCACGCAC
CTCGTGACCG GCCTGTACGA CGCGCGGCTC GACCACATGC CGGTGCTCGC GATCGTCGGC
CAGCAGGCGC GCGCGGCGCT CGGCGGCCAC TATCAGCAGG AAGTCGATCT GCCTGCGCTG
CTCAAGGACG TCGCGGGTGC TTTCGTCCAG CTTGCAGTGG TGCCCGCGCA GGTGCGCCAT
CTGGTCGACC GCGCGGTGCG CATCGCGCTC GGCGCGCGCA CCGTCACCGC GCTGGTGCTG
CCCAGCGACC TGCAGGAGCT CGACTACGCG CCGCCGAAGC GCGCGCATGG CACCGTGCAT
TCGGGGGTCG GCTATACGCC GCCGAAGGTG GTGCCGTACG CGGACGACCT GCAGCGCGCG
GCCGACGTGC TCAATGCGGG CAAGAAGGTC GCGATGCTGG TGGGCGCGGG TGCGCTGCAC
GCGACCGACG AGGTGATCGC GGTGGCCGAC CGGCTCGGCG CGGGCGCCGC GAAGGCGCTG
CTCGGCAAGG CCGCGCTGCC GGACGACCTG CCGTGGGTGA CCGGCTCCAT CGGGCTGCTC
GGCACCAAGC CGAGCTACGA GCTGATGACC GAATGCGACA CGCTGCTCGT CGTCGGCTCC
GGCTTCCCGT ATTCGGAATT CCTGCCGAAG GAAGGCCAGG CGCGCGGCGT GCAGATCGAC
CTGAAGGCCG ACATGCTGAG CCTGCGCTAT CCGATGGAGG TGAACCTCGT CGGCGACAGC
GCCGAGACGC TGCGCGCGCT GCTGCCGCTG CTGAAGGAGC GCGGCGACAC CGGCTGGCGC
GACCGGATCG CGAAATGGAA TGCGGACTGG CACGACACGC TGGCCGCGCG CGCGGCCGCG
AAGGCGAGTG CCGGGCGCGG CGTGAATCCG CAGCGCGCGT TCACTGAGTT GTCGTCGCGG
CTGCCCGACG ACGTGATCCT GACGAGCGAT TCCGGCTCGT GCGCGAACTG GTATGCGCGC
GACCTGATGA TGCGGCGCGG GATGATGGGC TCGCTGTCGG GCGGGCTCGC GTCGATGGGC
GCGGCGGTGC CTTACGCGAT CGCCGCGAAG TTCGCGTACC CGGTGCGCCC GGTGATCGCG
ATGGTCGGCG ACGGCGCGAT GCAGATGAAC AACATGGCCG AGCTGATCAC CGTCGCGAAG
TACTGGCGGC AATGGCCCGA TCCGCGCTGG ATCTGCATGG TGCTGAACAA CGAGGACCTG
AACCAGGTCA CGTGGGAGCA GCGCGTGATG GAAGGCGACC CGAAGTTCGA CGCGTCGCAG
CAGATTCCGA ACGTGCCGTA CTCGCGCTTC GCGACGCTGC TCGGACTGAA GGGCATCTAC
GTCGACGACC CGGAACAACT CGGCGCCGCT TGGGACGAGG CGCTGGCTTC CGACCGGCCG
GTCGTGCTCG AGGTGAAAAG CGATCCGGAG GTGCCGCCGC TGCCGCCGCA CGTGACGCTG
CAGCAGGCGA AGCACTTCGC CGAGACGCTG GTGAAGGGCG ACCCGCGTGA AGCGAACGTG
ATCGTCGAGA CGGCGCGGCA GGTGCTGTCG GCCGTGTTGC CGGGCAATGG CGAACACGGC
GGCAAGGGAA GCAAGAAGGA GTCGTAG
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| Protein sequence | MATVADFIVE RLYDWGVRRV YGYPGDGING FFGALSRAEG KIEFIQARHE EMAAFMASAH
AKFTGELGVC VATSGPGATH LVTGLYDARL DHMPVLAIVG QQARAALGGH YQQEVDLPAL
LKDVAGAFVQ LAVVPAQVRH LVDRAVRIAL GARTVTALVL PSDLQELDYA PPKRAHGTVH
SGVGYTPPKV VPYADDLQRA ADVLNAGKKV AMLVGAGALH ATDEVIAVAD RLGAGAAKAL
LGKAALPDDL PWVTGSIGLL GTKPSYELMT ECDTLLVVGS GFPYSEFLPK EGQARGVQID
LKADMLSLRY PMEVNLVGDS AETLRALLPL LKERGDTGWR DRIAKWNADW HDTLAARAAA
KASAGRGVNP QRAFTELSSR LPDDVILTSD SGSCANWYAR DLMMRRGMMG SLSGGLASMG
AAVPYAIAAK FAYPVRPVIA MVGDGAMQMN NMAELITVAK YWRQWPDPRW ICMVLNNEDL
NQVTWEQRVM EGDPKFDASQ QIPNVPYSRF ATLLGLKGIY VDDPEQLGAA WDEALASDRP
VVLEVKSDPE VPPLPPHVTL QQAKHFAETL VKGDPREANV IVETARQVLS AVLPGNGEHG
GKGSKKES
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