| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6477 |
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| Symbol | |
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| ID | 4315381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008392 |
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| Strand | - |
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| Start bp | 1144329 |
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| End bp | 1147652 |
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| Gene Length | 3324 bp |
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| Protein Length | 1107 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638154321 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_778355 |
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| Protein GI | 115361218 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCG GCCTGATGTT CTTCGCCAGC AGTGAAGAGG CGTTGTCCGG CAACAAGTAC
CAGCTTGTCA TGGAAAGCGC CCGTTTCGCC GATGCGAACG GGTTTTCCAG CGTCTGGGTG
CCGGAGCGCC ATTTCACCGA ATTCGGCTCG CTATACCCGA ATCCCGCTGT CCTGCACGCC
GCGCTCGCCG CGGCCACCCA GCGCGTGCAG CTGGTCGCGG GCAGCGTAGT CGCAGCGCTG
CACAACCCGA TCCGGATCGC GGAAGAGTGG TCCATGGTGG ACAACCTGTC GAACGGCCGC
GTGGGCGTGT CGTTCGCGTC CGGATGGAAT CCGGACGACT TCGTGTTCGC CCCGGACAAA
TATGCGACCC GGCAGGATGA CATGCTGACC ACGATGCGCG CCGTCCAGCA TCTGTGGCGC
GGCGGGTCGC TGGATGCGCG CAACGGCGTC GGCAAGCCGG TGCAGTTGCG CATCTATCCG
ACGCCGGTGC AGCCGGAGCT GCCCGTCTGG GTGACCGCCG CGAGCAATCC GCAGACCTTC
GTGCGCGCCG GTGAAGTCGG CGCCAACCTG CTGACCCACG TGCTCGACCA GGATCGGGAC
CAGCTCGCGC AAAAGATCGC GCTCTACCGC GCGGCGCGCG CAACGCATGG CTTCGATCCG
GCGGCCGGCA CCGTGTCCGT GATGCTGCAC ACGTTCGTCG GCGACGATGC GGCGCGGGTG
CGCGAGCAGG CGCGTGCGCC GTTCTGCAAC TACATCCGCA GCAATATCGG GCTGTTGAAC
GGGCTGGCGC AGAGCCGCGG GCAGTCGGTG GACGTGCGCG CGATGGGCGC GCGCGAACTG
GACGAGTTCG TCGAGTTTCT CTACGAACGT TTCGCGCAAT CGCGCGGCCT CATCGGCACG
CCGGAAACCT GCGTCGACCT GGTGCGCGAT CTCGAGTCGA TCGGCGTGGA CGAAGTGGCC
TGCCTGCTCG ATTTCGGTCC GCCGGTCGAG CTGATCCTCG GCAATCTACC GCAGTTGCGT
CGGCTGCGGG AGCTGTGTGC CCCGAGGCAA TCCGCCGCGC CGACGAGATT CGATGCCGCC
GCGGTGCAGG CCCGCTGCAT CGAAACGACT TCAGGCGCGG ACTTCAATGG CGAAGTGCGG
CAGCACGGCG TGCAGATCGA CGGCGTGTTC GACGCGATCC AGCAGATCTG GCGCACGGCC
GGCGAGGCGC TGGGGAAAAT CAGCCTGCCG GCCGACGCGC TGGCGTCGTC GCAATACCAG
GTGCACCCCG CCTTTCTCGA CGCGTGCAGC CGTGTGCTCG CCGCCGCGAT CGATCCGGCC
GCGCTGGAGG CGGGCGACCT GTACCTGCCC AGTTCGATCG GTGCGGTACG GGTTCATCAG
CCGCCGTCGT CAACGGATGC ATGGAGTCAC GCCACGCTGC GCAAGCCGAT CGGGCAAGGC
GCGCTGGAGG GCGATATCCG CGTCCATGAC CTCGACGGGC GACTGCTGAT CGAGATCGAT
GCGCTGCGGT TGCAGCATGT GCGTTCCGCG TCCACCATCG AGCGGCACGA CTTGTCCGCG
CTGCTCTATC AGCGCGTGTG GAGACCGTCG AGCGTCGACG CGGCAACCGG CGCTTCGGCG
CAGGGCGAGT GGCTGATTCT CGCGGACCGC GGCGGCGTCG GCGCGCAACT GGCCGACCTG
CTGCAAAGCG CGGGCGATAC GTGCACGCTG CGCTTCGCCG ACGCGACGCC GGAACTGCCC
GCACCCGACC GGCCGCTGAA GGGCATCGTT CACCTGTGGA GTCTCGATCT CGCGCCGGCC
GACATCGCGG CGAGACGGCG TGCCAGCGCG AGCGTGCTGC AACTGGTCAG GGCGCTTGCG
TCACGCGCAC CGGCGGCGCG GCAGGCGCGT CTGTGGCTGG TGACGTCGGG CGCGATGAAC
GTGCTGGACG GCGAATCGAG CGCCCCGGCC CAGGCTCCCC TGTGGGGATT GGGGCGGGCG
ATCGCCGTGG AGCACGCGGC GCTGTGGGGC GGGCTCATCG ACCTCGATCC CGCGCAGCCG
TCGGCGGCGC ACATCGTGCA GGCGGTACAG GCCGGCGGCC GTGAAGACAT GATCGCGTTC
CGCGGCGGAC AGCGCTACGT CGCGCGTATC GCCCGCGACA ATCGCGAATT CGTCAGTCAC
CGTCCGATCA GGTTCCACCA TGACGCGACC TATCTGGTGA CCGGCGGGCT CGGCGGGCTC
GGCCTGCGGC TCGCGTCCTG GCTTGCCGCC AACGGCGCCG GCAAGGTCGT GCTGCTCGGG
CGCGGCGCGC CCTCCCCCGC GGCCGAAAAA ATCCTGAGCA CGCTCGACGC GCGGTTCATT
CGCGCCGACC TGTCGCGTCG CGAGGACGTC GCGCAGGCGC TCGGTGAAAT CGCGCATTCG
ATGCCGCCGC TCAAGGGGGT CTTTCACCTC GCCGGCGCGC TGGACGATGC GTTGCTCACG
CGCCAGGACG ACGATGCCTT CCATCGCGCC GGAAGCGGCA AGGCCGATGG CGCGTGGTAT
CTGCACGAGC TGACGGCCGA CCTGCCGCTC GATCATTTCG TGCTGTTCTC GTCGATGGCC
GCGCTGATCA CCATGCCGGG CCAGGGCAAC TACGCGGCGG CGAACAGCTT CCTCGACGCC
CTCGCGCAGC ATCGGCGCGC GCAGGGAAAA CCGGGGCTCA GCGTGAATTG GGGGCCGTGG
GCGGAGATCG GCCACGCCGC GACCGACTAT GGACGGCGCG CGCACGAACA GCTGGCCGCG
CTCGGCGTCG GCACGCTGTC GCCCGAACTG GCCATCGCGG CGCTGGAACG GCTGATGGCG
TCCGGCGTCG TCCAGTCCGG CGTGGCCCGG ATCGACTGGC CGACCCTGTT CCGGGTCGAC
GCGCCGGCCG CCGGGTCGGC GCTGTTTTCC GAGCTGGCGC AACCGGCCGC GCAGCCTGCG
CAGCAAGAGA CGGCATTGCT GCGCCAACTG CATGCGTGCG CGCCGCGCGA GCGGGTCGAG
CTCATCACCG ACACGCTCGC GAAGATGCTG GCCGAGACCC TTCGTCTGTC CGGCCCCGAC
GCCATCGCGG CCGAGCAATC GCTGCTCGAT CTCGGCCTGG ATTCGCTGGT CGCGCTCGAA
CTGACCGACC GCCTCAACAA GGTGTTCGGA CGGCCGTTTC GCGCGACGCT GTTCTTTTCC
TATCCGAACC TGCAAACGCT CGCCCAGTAC GTTCTCAACG AACTGTCGCC GTCGCTCCCC
GCGCCTGTCG TCGATGAAGC ATCCGACGAC CTCGACGAGG ACGACCTTTC CGAACTGATC
GCCCAGGAGA TCGGCGCCCA ATGA
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| Protein sequence | MKFGLMFFAS SEEALSGNKY QLVMESARFA DANGFSSVWV PERHFTEFGS LYPNPAVLHA
ALAAATQRVQ LVAGSVVAAL HNPIRIAEEW SMVDNLSNGR VGVSFASGWN PDDFVFAPDK
YATRQDDMLT TMRAVQHLWR GGSLDARNGV GKPVQLRIYP TPVQPELPVW VTAASNPQTF
VRAGEVGANL LTHVLDQDRD QLAQKIALYR AARATHGFDP AAGTVSVMLH TFVGDDAARV
REQARAPFCN YIRSNIGLLN GLAQSRGQSV DVRAMGAREL DEFVEFLYER FAQSRGLIGT
PETCVDLVRD LESIGVDEVA CLLDFGPPVE LILGNLPQLR RLRELCAPRQ SAAPTRFDAA
AVQARCIETT SGADFNGEVR QHGVQIDGVF DAIQQIWRTA GEALGKISLP ADALASSQYQ
VHPAFLDACS RVLAAAIDPA ALEAGDLYLP SSIGAVRVHQ PPSSTDAWSH ATLRKPIGQG
ALEGDIRVHD LDGRLLIEID ALRLQHVRSA STIERHDLSA LLYQRVWRPS SVDAATGASA
QGEWLILADR GGVGAQLADL LQSAGDTCTL RFADATPELP APDRPLKGIV HLWSLDLAPA
DIAARRRASA SVLQLVRALA SRAPAARQAR LWLVTSGAMN VLDGESSAPA QAPLWGLGRA
IAVEHAALWG GLIDLDPAQP SAAHIVQAVQ AGGREDMIAF RGGQRYVARI ARDNREFVSH
RPIRFHHDAT YLVTGGLGGL GLRLASWLAA NGAGKVVLLG RGAPSPAAEK ILSTLDARFI
RADLSRREDV AQALGEIAHS MPPLKGVFHL AGALDDALLT RQDDDAFHRA GSGKADGAWY
LHELTADLPL DHFVLFSSMA ALITMPGQGN YAAANSFLDA LAQHRRAQGK PGLSVNWGPW
AEIGHAATDY GRRAHEQLAA LGVGTLSPEL AIAALERLMA SGVVQSGVAR IDWPTLFRVD
APAAGSALFS ELAQPAAQPA QQETALLRQL HACAPRERVE LITDTLAKML AETLRLSGPD
AIAAEQSLLD LGLDSLVALE LTDRLNKVFG RPFRATLFFS YPNLQTLAQY VLNELSPSLP
APVVDEASDD LDEDDLSELI AQEIGAQ
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