Gene Bamb_6248 details

Gene Information

• Locus tag: Bamb_6248
• ID: 4315152
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008392
• Strand: +
• Start bp: 834340
• End bp: 840330
• Gene Length: 5991 bp
• Protein Length: 1996 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 638154092
• Product: excinuclease ABC, A subunit
• Protein accession: YP_778126
• Protein GI: 115360989
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0178] Excinuclease ATPase subunit
• TIGRFAM ID: [TIGR00630] excinuclease ABC, A subunit

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCGGCCCG TTCGCCGCGT CTGCGGGCAT CCGCCGCAGC GTTCCGGCAC CGTGATTCCG 
GCTAACTCAT TCAGACGGGC AGGCAAATTG TCATCCAGCA ATCTGATCCG CATTCGCGGA 
GCACGTCAGC ACAACCTCAA GAACCTCGAT CTCGATCTGC GCACCGGCGA AATGACGGTC 
GTCACCGGCC CGTCGGGCTC CGGCAAGTCG AGCCTCGTAT TCGACACGCT GTACGCGGAA 
GGCCAGCGGC GCTACGTCGA GACCTTCAGC GCGTATGCGC GGCAGTTCCT CGACCGGATG 
GACCGCCCGC AGGTCGAGCG CGTCGACGGC GTGCCGCCCG CGATCGCGAT CGACCAGACC 
AACCCGGTCC GCAGCTCGCG CTCGACGGTC GGCACGATGA CCGAGCTCAA CGATCACCTG 
AAGCTGCTGT ACGCGCGCGC GGCCGAGCTG TTCGACCGCC AGACCGCGCG GCAGGTGCGG 
CATGACACGC CCGAGACGAT CTACGCGGAA CTCGTCGAGC GCACGCGCGC CGACGATCCG 
CGCGTCGTCG TCACGTTTCC GGTGGAGCTG CCGGAAAGCG CGTCCGAGGA CGAAGTCGCG 
CAGTGGCTGT CCGCGAGCGG CTACACGCGC GTGCAGGCGC AGCGCGAAGT CGCGTCGCCC 
ACCGGCCCGC GCAAGCTGCT CGACGTGGTG GCCGACCGCT TCCGCGTGCA GCAGGCCGAC 
AAGGTGCGCG TGGTCGAGGC GATCGAGGCG TCGCTCAAGC GCGGCGGCGG CCGCGTGAAC 
GTCTACGTGC TGGCGCCGGA ATCCGACAAC GCGCTCGCCG CGACCGCCGA GCCGCAGGTG 
TGGCGTTTCT CCACCGGGCT GCACGATCCC GACAGCGACC TGCGCTACGC GGAGCCGCAG 
GCGGCGCTGT TCTCGTTCAA CTCGGCCTAC GGCGCATGCG AAACCTGCCG CGGCTTCGGC 
CGCGTGATCG GCGTCGATCT CGGCCTCGTG ATCCCCGACG CGCGCAAGAC GCTGCGCGGC 
GGCGCGATCA AGCCGATGCA GACGCCCGCG TGGAAGGAAT GCCAGGACGA CCTGATGCGC 
TACGCGGCGA AAGCCGGCAT CCCGCGCGAC ACGCCGTGGT CCGACCTGAC GGACGCCGAG 
CGCGCATGGG TGATCGACGG CTCGCCGGAC TGGAACGGCA AGTGGCAGAG CCAGTGGTAC 
GGCGTCAAAC GCTTCTTCGG CTATCTCGAG TCGAAGGCGT ACAAGATGCA TATCCGCGTG 
CTGCTGTCGA AGTACCGCAG CTACACGCCG TGCGACGTGT GCGGCGGCGC GCGCCTGAAG 
ACCGAATCGC TGCAGTGGCG GCTCGGCTCG AAGGCGAACG CCGACGCGGT GCTCGCGCCC 
GCCAATCGGT TCCTGCCGCG CGGCGTCGAC TGGACGCGCG CGCAGCTCGA GGCGCTGCCG 
GGCCTGACGG TGCACGACCT GATGCTTTTG CCGATCGAGC GCATCCGCCG CTTCTTCGGC 
GACGTGAGCC TGCCGAGCGC GCTGCTCGAC GACGCGCTGA AGCTGCTGCT CGCCGAAGTG 
CGCACGCGCC TGAAATACCT GTGCGACGTC GGCCTCGGCT ACCTGACGCT CGACCGGCAG 
AGCCGCACGC TGTCCGGCGG CGAGGTCCAG CGGATCAACC TGACCACGGC GCTCGGCACG 
TCGCTCACGA AAACGCTGTT CGTGCTCGAC GAGCCGAGCA TCGGCCTGCA TCCGCGCGAC 
CTCACGCGGA TCGTCGAGGC GATGCAGCGG CTGCGCGACG CGGGCAATAC GCTGGTCGTC 
GTCGAGCACG ATCCGTCGGT GATGCTCGCG GCCGACCGGC TGATCGACAT GGGCCCGGGG 
CCCGGCGAGC GCGGCGGCAC GATCGTCTAC GACGGCACGC CGGGCGACAT CCGTTCCGCG 
CACACGCTGA CGGGCGAGTA TCTCGGCGGC CGCAAGCACG TCGCGCATGC GTCGAACTGG 
GCGCGCCGTC CGGTGGACGC GAACACGCCG CGCATCGTGC TCGCAGGCGC GACCGAGCAC 
AATCTGCGCG ACGTGACGGT CGAGATTCCA CTGCAGCGGC TCGTGTGCGT GACGGGCGTA 
TCGGGTTCCG GCAAGTCGAC GCTGCTGCAG GACGTGCTCT ATCCGGCGAT GGCGCGCCAC 
CACGGCAAGG CGACCGAGTC GCCGGGCGCG TTCCGCGAGT TGACGGGCGC CGACCAGGTC 
GGCGACGTCG TGTTCGTCGA TCAGTCGCCG ATCGGCAAGA CCACGCGGTC GAACCCGGCC 
AGCTATGTCG GCGCGTTCGA CGAGATCCGC AAGCTGTTCG CGAAGGCGCC GCTCGCGCTG 
CAACGCGGCT ACGGCGCCGG CACGTTCAGC TTCAACTCGG GCGACGGCCG TTGCCCGACC 
TGCGGCGGCT CGGGCTTCGA GCACATCGAG ATGCAGTTCC TGAGCGACGT CTACCTGCGT 
TGTCCGGACT GCGACGGCAG CCGCTACCGC GCCGAGATTC TCGAAGTGCG CATCGAACGC 
GACGGCCGTG CGCTGAACAT CGCCGACGTG CTCGACCTGA CCGTCAGCGA GGCAACTGCG 
TTCTTTGCGA CCGACGCCGA GGTGCTGCGC GTGCTGCAGC CGATCGTCGA CGTCGGTCTC 
GAATACGTGA AGCTCGGCCA GCCGGTGCCG ACGTTGTCCG GCGGCGAAGC GCAGCGGCTG 
AAGCTGGCCG GCTTCCTCGC CGAATCGGCG GCGGCCGCTG GCGGGCGCCG CGTCGCCAGC 
GAGGAGGCGC GCGTCGCGCG GGCGAAGCTG TTCATGTTCG ACGAGCCGAC CACCGGGCTG 
CACTTCGACG ACATCGCGAA GCTGATGCAG GCGTTCGGCA AGCTGCTCGC GGCCGGCCAT 
TCGCTGATCG TGATCGAGCA CAACCTCGAC GTGATCCGCG CGGCCGACTG GCTGATCGAT 
CTCGGCCCGG AAGGCGGCGA CGGCGGCGGC CGCGTGCTGT GCGCGGGTAC GCCCGACGAC 
GTGAAGGCCT GCGCGGAATC GCATACCGGC GTCGCGCTGC TGCAGTACGA CCGCGCGATG 
GACGGCGAAA CGGCGCTGGC CGACGAAGGC GTGCCGCTGC AGGCCGTGCT GAACGCCGCA 
CGCGAGCGGC GCGCGATCGA GGGTGAAGAC GTCGTGCGGA TCGTCAACGC ACGCGAGCAC 
AACCTGAAGG CGCTCGACGT CGATATCCCG CACGGCAAGT TCAACGTGAT CACCGGCGTG 
TCGGGTTCCG GCAAGTCGAC GCTCGCGTTC GACATCCTGT TCCACGAAGG CCAGCGCCGC 
TACCTCGAAT CGCTGAACGC GTATGCGCGC TCGATCGTGC AGCCGGCCGG GCGGCCGGAA 
GTCGACGCGG TGTACGGCAT TCCGCCGACG GTGGCGATCG AGCAGCGCCT GTCGCGCGGC 
GGCCGCAAGA GCACGGTCGC GACCACGTCC GAAGTCTGGC ACTTCCTGCG GCTGCTGTAT 
GTGAAGCTCG GCCTCCAGCA TTGCATCCAC GACGGCACGC CGGTCACGTC GCAAACCGTC 
GAGTCGATCG CCGCGCAGCT GCTGCGCGAC CATCGCGGCG AGCACGTCGG GCTGCTCGCG 
CCGCTCGTCG TCAATCGCAA GGGCGTGTAT ACCGATCTCG CGAAGTGGGC GAAGGCGCGC 
GGCAGCACGC ATCTGCGCGT GGACGGCGAG TTCGTGCCGG TCGATCCGTG GCCGAAGCTC 
GATCGCTTCC GCGAGCACAC GATCGAGCTG CCGGTGGCCG ATATCGTCGT GTCGCCGGAC 
GACGAAGCCG GATTGCGGCG GGTGCTCGAC GAGACGCTCG AGCTCGGCAA GGGCGTGATG 
CACCTGCTCG CGCCGCTCGA CGGGCTGCAC CACGCGGTGC AGAACGGTCA TTCGACCGCG 
CGCGTCGGCG AGGTCAAGGT GCTGTCGGTC AAGCGTGCGT GCCCGGTGTG CGGCACGAGC 
TATCCGGAAC TCGATCCTCG GATGTTCTCG TACAACAGCA AGCATGGCTG GTGCACGACC 
TGCGTTGGCA CGGGCGTCAC GCTCACGCGC GAACAGCGCG CGGCGTACGA CGACACCGTG 
CGCGCCGGGG ACGATCGCGG CCGCGAGCAG ACGCTGCCGT CGGACGAGCA GGAACCGGAA 
GGCGTCGGCA ACGAGCCGTG CCCGGATTGC GGCGGCACGC GCCTGAACCC GTCCGCACGC 
GCGGTCACGT TCGACGCGCA TCCGATCGTC GAGGTCGCGC AGTGGACGGT GTCCGATACG 
CGCCGCTGGA TCGACGCGCT GGAACTGACC GGCCGCGACG CGCAGATCGC GCGCGACATC 
GTCAGCGAGA TCGGCAGCCG CCTCGCGTTT CTCGAAGAGG TCGGGCTCGG CTACCTGAGC 
CTCGATCGCG CGGCGCCGAG CCTGTCGGGC GGCGAAGCGC AGCGCATCCG GCTCGCCGCG 
CAGCTCGGCA GCAACCTGCA GGGCGTGTGC TACGTGCTCG ACGAGCCGAC GATCGGCCTG 
CATCCGCGCG ACAACCGAAT CCTGCTGGAC GCGCTGCGCA AGCTCGGCGA CAAGGGCAAC 
ACGCTCGTCG TCGTCGAGCA TGACGAGGAC ACGATTCGCC GCGCCGATCA CATCATCGAC 
GTCGGCCCGG GCGCCGGCAA GCGCGGCGGC ACGTTGGTCG CCGAGGGCGC GGTCGCCGAT 
CTGGCCGCGC AGCCGGATTC GGTGACGGGG CGCCTGCTCG CGCAGCCGAT GACGCATCCG 
CTCCAACCGC GCCGCGCGGT GAGCCTGGCG GGCAAGAAGG GCGCGCCGGC GGTGCCGGAG 
GCCTGGCTGA CCGTGCACGG CGCGACGCTG CACAACTTGC GCGACGTCAC CGTCGGCATT 
CCGCTCGCGC GGCTCGTCGC CGTGACGGGC GTGAGCGGCT CGGGCAAGTC GACGCTCGCG 
CGCGACGTGC TGATGACGAA CCTGCTCGAC GCGGTTGGCC GCTCGGTGCT GTCGTCGCCG 
GCCACGCGGC GCGCGCGCAA GGCCGCGCAG CAGGACGCGC CGGCCGCCAA CCGCCGCTCG 
AGCGTGCTCG CGCGCAGCGC GCCGCGGCCG TCGCTGAACG TCACGCATGC GTGGCAGGGC 
TGCGCGTCGC TGAGCGGCTG GGAGCGGATC GACCGCGTGC TCGAGGTCGA CCAGACGCCG 
ATCGGCAAGA CGCCGCGCTC GTGTCCGGCC ACCTACATCG GCGTGTGGGA CACGATCCGC 
AAGCTGTTCG CCGATACGCT GGAAGCGCGT GCGCGCGGCT ACACGGCGTC GCGTTTCTCG 
TTCAACACCG GCGACGGGCG CTGTCCGGCC TGCGAAGGGC AGGGCGTGCG CACGATCGGG 
ATGAGCTTCC TGCCCGACGT GAAGGTGCCG TGCGACGTGT GCCACGGGCA GCGCTTCAAT 
CCGGAGACGC TCGCGGTCAC GTGGCGCGGC CGGAACATCG GCGACGTGCT GACGATGGAG 
ATCGACGAAG CGGTGGAGTT CTTTGCACCG ATTTCGAACA TCGCGCATCC GCTGCAGCTG 
ATGAAGGACG TCGGCCTCGG CTATCTGACG CTCGGCCAGC CGTCGCCGAC ATTGTCGGGC 
GGCGAGGCGC AGCGCATCAA GCTCGTCACC GAGCTCACGA AGGTGCGCGA CGACATCACG 
CGACGCGGCC AGAAGGCGCC GCACACGCTG TACGTGCTCG ACGAGCCGAC GGTCGGCCTG 
CATATGGCCG ACGTCGCGAA GCTGATCCGC GTGCTGCACC GGCTGGTCGA CGGCGGGCAT 
AGCGTCGTCG TGATCGAGCA CGATCTCGAC GTGATCGCGG AAGCCGACTG GGTCATCGAT 
CTCGGTCCGG AAGGCGGCGT GGGCGGTGGC ACGATCGTCG CGGCGGCGCC GCCGGAAGGG 
CTCGTGCAGG TGAGCGCGAG CCATACCGGG CAAGCGTTGA AGCCCGTGCT GGCGCGAACG 
GCCGCGGATG GCGGTGAAGC CGAGCGGCAG GACGAGGCGC GGGTCGGTTA A 

 

Protein sequence

MRPVRRVCGH PPQRSGTVIP ANSFRRAGKL SSSNLIRIRG ARQHNLKNLD LDLRTGEMTV 
VTGPSGSGKS SLVFDTLYAE GQRRYVETFS AYARQFLDRM DRPQVERVDG VPPAIAIDQT 
NPVRSSRSTV GTMTELNDHL KLLYARAAEL FDRQTARQVR HDTPETIYAE LVERTRADDP 
RVVVTFPVEL PESASEDEVA QWLSASGYTR VQAQREVASP TGPRKLLDVV ADRFRVQQAD 
KVRVVEAIEA SLKRGGGRVN VYVLAPESDN ALAATAEPQV WRFSTGLHDP DSDLRYAEPQ 
AALFSFNSAY GACETCRGFG RVIGVDLGLV IPDARKTLRG GAIKPMQTPA WKECQDDLMR 
YAAKAGIPRD TPWSDLTDAE RAWVIDGSPD WNGKWQSQWY GVKRFFGYLE SKAYKMHIRV 
LLSKYRSYTP CDVCGGARLK TESLQWRLGS KANADAVLAP ANRFLPRGVD WTRAQLEALP 
GLTVHDLMLL PIERIRRFFG DVSLPSALLD DALKLLLAEV RTRLKYLCDV GLGYLTLDRQ 
SRTLSGGEVQ RINLTTALGT SLTKTLFVLD EPSIGLHPRD LTRIVEAMQR LRDAGNTLVV 
VEHDPSVMLA ADRLIDMGPG PGERGGTIVY DGTPGDIRSA HTLTGEYLGG RKHVAHASNW 
ARRPVDANTP RIVLAGATEH NLRDVTVEIP LQRLVCVTGV SGSGKSTLLQ DVLYPAMARH 
HGKATESPGA FRELTGADQV GDVVFVDQSP IGKTTRSNPA SYVGAFDEIR KLFAKAPLAL 
QRGYGAGTFS FNSGDGRCPT CGGSGFEHIE MQFLSDVYLR CPDCDGSRYR AEILEVRIER 
DGRALNIADV LDLTVSEATA FFATDAEVLR VLQPIVDVGL EYVKLGQPVP TLSGGEAQRL 
KLAGFLAESA AAAGGRRVAS EEARVARAKL FMFDEPTTGL HFDDIAKLMQ AFGKLLAAGH 
SLIVIEHNLD VIRAADWLID LGPEGGDGGG RVLCAGTPDD VKACAESHTG VALLQYDRAM 
DGETALADEG VPLQAVLNAA RERRAIEGED VVRIVNAREH NLKALDVDIP HGKFNVITGV 
SGSGKSTLAF DILFHEGQRR YLESLNAYAR SIVQPAGRPE VDAVYGIPPT VAIEQRLSRG 
GRKSTVATTS EVWHFLRLLY VKLGLQHCIH DGTPVTSQTV ESIAAQLLRD HRGEHVGLLA 
PLVVNRKGVY TDLAKWAKAR GSTHLRVDGE FVPVDPWPKL DRFREHTIEL PVADIVVSPD 
DEAGLRRVLD ETLELGKGVM HLLAPLDGLH HAVQNGHSTA RVGEVKVLSV KRACPVCGTS 
YPELDPRMFS YNSKHGWCTT CVGTGVTLTR EQRAAYDDTV RAGDDRGREQ TLPSDEQEPE 
GVGNEPCPDC GGTRLNPSAR AVTFDAHPIV EVAQWTVSDT RRWIDALELT GRDAQIARDI 
VSEIGSRLAF LEEVGLGYLS LDRAAPSLSG GEAQRIRLAA QLGSNLQGVC YVLDEPTIGL 
HPRDNRILLD ALRKLGDKGN TLVVVEHDED TIRRADHIID VGPGAGKRGG TLVAEGAVAD 
LAAQPDSVTG RLLAQPMTHP LQPRRAVSLA GKKGAPAVPE AWLTVHGATL HNLRDVTVGI 
PLARLVAVTG VSGSGKSTLA RDVLMTNLLD AVGRSVLSSP ATRRARKAAQ QDAPAANRRS 
SVLARSAPRP SLNVTHAWQG CASLSGWERI DRVLEVDQTP IGKTPRSCPA TYIGVWDTIR 
KLFADTLEAR ARGYTASRFS FNTGDGRCPA CEGQGVRTIG MSFLPDVKVP CDVCHGQRFN 
PETLAVTWRG RNIGDVLTME IDEAVEFFAP ISNIAHPLQL MKDVGLGYLT LGQPSPTLSG 
GEAQRIKLVT ELTKVRDDIT RRGQKAPHTL YVLDEPTVGL HMADVAKLIR VLHRLVDGGH 
SVVVIEHDLD VIAEADWVID LGPEGGVGGG TIVAAAPPEG LVQVSASHTG QALKPVLART 
AADGGEAERQ DEARVG