| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6126 |
|---|
| Symbol | |
|---|
| ID | 4315030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 686210 |
|---|
| End bp | 687301 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638153970 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_778004 |
|---|
| Protein GI | 115360867 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2706] 3-carboxymuconate cyclase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.010909 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACA ACACAGCATG GCGCGCCGTC GCGGCCGCCG CATTCGCGCT GGCCGCATCG
CTCGCGCATG CCGCGACGTA TGCGTACGTA TCGAACGGCG ACAGCCGCGA CATCTCGGTG
TTCGGCGTCG ACACGTCGAG CGGCGCGCTG CGCGCGATCG AAACCGTGCC GGTCGACGGC
ACCGTGATGC CGATGACGTT GTCGCCCGAT CATCACCGGC TGTACGCGGC GCTGCGCTCG
ACGCCGTATC GCGTCGTCAG CTTCGCGATC AATCCGCTCG ACGGGCGGCT GATCGAGCTG
GGCCGCGCGC CGCTCGCGGA CAGCATGGCG TATGTGTCGA CCGATGCGTC GGGCCGCTAC
CTGTTCTCCG CGTCGTACGG CGGCAACCTG CTCGCGGTCA ACCGGATCGG CGAGAACGGT
GTGGCCGGCG ACGTGCAGCA GACGATTAAG ACCGGCCCGA TGGCGCATGC GATCCGCCAG
TCGCCGGACG GCCGCTACGC ATTCGCGTCG GTGCTCGGCG CCGATGCATG GCTGCGTCTG
CCGTTCGATG TGTCGACCGG CAAGCTGACC GACACGGCCG AGCCCGCGTA CCGGCTGCCG
GAGAAGTCGG GGCCGCGCCA TTTCGTGTTT TCGTCGAACG GGCGGTTCGC ATACCTGATT
GACGAGCTCG ACGGCAAGCT GCACGTGCTG GCGCTGTCGC ATGGCGGCGC CGAGGCGCGG
CCGATTCAGA CGGTGTCGAT CCTGCCGCCG GATTTTCATG GCGACAAGCC GTGGGGCGCG
GACCTGCACC TGACGCCGGA CGGCAAGTTC CTCTACGCGT CGGAGCGCAC GTCGAGCACG
CTCGCGGCGT ACCGGGTCGA CGCGGTATCG GGCAAGCTCG CGCGAGTCGG CACGTTCGCG
ACCGAGCGGC AGCCGCGCGG CTTCGCGATC GATCCGTCGG GCACGTATCT GCTCGCGGCC
GGGCAACTGT CGCCGACGCT CGCGGTGTAT CGCATCGACC GGCACACCGG CCACCTCGAC
GCGATCGGCA AGTATCCGGT CGGCAAGGGG GCGAACTGGG TCGAGATCGT CACGTACGAC
GGGACGAACT GA
|
|---|
| Protein sequence | MNHNTAWRAV AAAAFALAAS LAHAATYAYV SNGDSRDISV FGVDTSSGAL RAIETVPVDG
TVMPMTLSPD HHRLYAALRS TPYRVVSFAI NPLDGRLIEL GRAPLADSMA YVSTDASGRY
LFSASYGGNL LAVNRIGENG VAGDVQQTIK TGPMAHAIRQ SPDGRYAFAS VLGADAWLRL
PFDVSTGKLT DTAEPAYRLP EKSGPRHFVF SSNGRFAYLI DELDGKLHVL ALSHGGAEAR
PIQTVSILPP DFHGDKPWGA DLHLTPDGKF LYASERTSST LAAYRVDAVS GKLARVGTFA
TERQPRGFAI DPSGTYLLAA GQLSPTLAVY RIDRHTGHLD AIGKYPVGKG ANWVEIVTYD
GTN
|
|---|
| |