| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_5922 |
|---|
| Symbol | |
|---|
| ID | 4314827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 427850 |
|---|
| End bp | 433915 |
|---|
| Gene Length | 6066 bp |
|---|
| Protein Length | 2021 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 638153762 |
|---|
| Product | beta-ketoacyl synthase |
|---|
| Protein accession | YP_777801 |
|---|
| Protein GI | 115360664 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3321] Polyketide synthase modules and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00805529 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACA TGGACAAGGA CCTGCTGCTG CAATCGATCC AGACGATCCG CGAACTGAAG
ACGCGGCTCG CGCAGGCCGA GCAAGGCCAT CACGAGGCGG TGGCGGTGGC GGTGGTCGGC
GTGTCGCTGC GCTTTCCCGG AGGCGTGACC GATCTCGACA GCTACTGGGC GCTGCTGCGA
GAAGGCCGCA GCGGGGTGAT CGAGGTCGAG CCCGAACGCT GGAGCAACCG CCAGTTCGTC
GATCCCGACT ATGCCGCCGC CGGCAAGCTG GTGACGCCGT ATGCGGGACT GCTGGAGCAC
ATCTACGATT TCGACGCCGA ATTCTTCGGC CTGTCCGCGC TCGAGGCCGA GAACCTCGAT
CCGCAGCAGC GGCTGCTGCT CGAACAGAGC TGGCTCGCGC TCGAGGATGC CGGCTACGAC
ATCGGCCGGC TGCGCGGCAG CGATACCGGC GTGGTGGTGG GGATCGGCAG CCAGGATTAC
GGCATGGCGC TGCTGGCCGA TCCCGCCCAC GCGAATCCCT ACGTGGCCTC CGGCAACTCG
TTGAGCATGG CGGCCGGGCG GCTGTCCTAC TTCTTCGACT TCAGCGGCCC CTCGCTGTCG
ATCGACACCG CCTGCTCGTC CTCGCTGGTG GCCGTGCACG AGGCCTGCCG GCGCCTGCAG
CTGGGCGAAT GCGGCCTGGC GCTGGCGGCC GGCGTCAACG CGATGCTGAC GCCGCACGCG
GGCATCAACT TCTCGCGCGC ACGGATGCTG AGCACCGAGC GCGACTGCCA TACCTTCGAC
GCGCGCGCCA AGGGGTACGT GCGCGGCGAG GGCTGCGCGG TGCTGGTGCT CAAGCGCCTG
GCCGACGCGC AGGCTGACGG CGACCGCATC CACGCCGTGA TCCGCGGCGT GGCGATCAAC
CACGACGGCC ACAGCAGCGG CCTGACCGTG CCCAACGGTT CGGCCCAGCG CGCGGTGATC
CGCGCGGCGC TGCGGCGCGC CGGCGTGGCG CCCGCCGAGG TCGACTACGC CGAGGCCCAT
GGCACCGGCA CGCGGCTTGG CGATCCGATC GAGGCGCATG CGATCGCCGA CGTCTACGGC
GAGGCGCGCG AGGCGGGCCG CCCGCTCGTG ATCGGCGCGG TGAAGGCGAA CCTCGGCCAT
CTCGAGGCCG CGGCGGGTCT GGCCGGGTTG ATCAAGGCGA TGCTGGTGGT GCGCCACGGC
GAGGCGCCGC CGCAGCCCGG CTTCGAGACG CTGAATCCCG CGATCGGCTG GGATACCGCG
AAGTTCAAGG TGGTGCGGCA GCCCACGCCG CTGCGGCCCG CCGACGGGCG GCCCTGGCTG
GCCGGCGTCA GCAGCTTCGG CTTCAGCGGC ACCAACGCGC ACGCGATCGT CGCGGCGGCG
CCCTTGGCGG CCGAGGAGGG CGAGCCGGCG GCCGAGCCGC CGGGCGGCCT GCACGTGCTC
GCGCTGAGCG CGAAGACGCC CGAGGCGCTG GGTCGTCATG TCGAGGAAGT GGCCGCCTAC
CTGGCCGGCA AGCCCGCAGC CGAGCTGGCC GCGATCGCGC AAACCTCGAC CTGCCGGCGC
GTCGCGCTCG GCGAGCGGAT CGCCGTGACC GGGCGCGACG GCGCCGAGCT GGCCGCGCGG
CTAAGGCGCG CGCTGGCCGA GCGCGCGCCG CGGCGCGCGC CGGGCCGCAT CGTGCTCTAC
CTGTCGAGCG CCGACCTGCC GGCCGGCACG GCCGACCCGG CCGCGCTGGC CGCCTTGCAT
CGCGGCTGGC TGGCGCGCTG CGCCGGCTTC GGCCTGTTCC CCGATCGGGT GGTGCTGCGC
GGCATCGCGC CCGCCTTCGT GCGCGCCTGG CTCTGGCAGC ATGCCGAGCC CACCGGGCTC
GCCTACCTGG ACGAGACGGC CGGCGACGCG CTGCGCGGCT TTTCCACCAG CGAGACGGCC
GCCGGCGAGG TCATTGCCGC AGAGGCGGCA GCGGCCGAGC TGTTCGAGGA CGCGGAGGTG
CTCGCGCTCG GCGCGCCGCC GTTTGCCTTG CCGGCCTCGT CGTCGACCCG CTGGTTGCGC
CTCGACGACG AGGCCGCACT GCGCACGACG CTTGCCGCGC TCTTCACGGC CGGCATCGAG
ATCGACTGGA CGCCGCTCGA TGCGCGACGC CATCGCGTGG TCCGCGACTT TCCGCGCCGG
CCCTTCGCAC GCCGAAGCTT CCGCTCGCCT CGCATCGACG CGGCACTGGC CGGCGCCGAC
GCGCCGCGCG AGAGCGAAAG CGCGATCCAT CCGCTGGTGC GCGATCGCCT GGCGCAGCCC
GACGGCCGCG TGAGCTGCCG CCTGCGCACG GCCACGGCCT GGCTCGATTT CATCGACGGC
CACCGTGTGC AGGGGCATCG TCTGCTGCCG GCCTCGCTGC TGCTCGAACT GATGCGCACG
GCGGCGGCCG ATGCGCGCGG CGCGGCGGTG ACGCTCAGCG ACGCGCGCTT CCGGCGCCCC
TTCGATCTCG ACGCGGCCGC CTGCGATTAC CTGGTCCAGG TCGATGCGCC GGGCGAGGGC
GCGCGCGTCG CTCTGTGGGG CCGGCCGGCC GACGATGCGG CGGCGCCCTG GGTCGAGCAT
GCGAGCGCCG CCTGCCGCCT CGCCGAGACG ACGGATGCGC AGGACGCGCC GCCGGCCGAG
GTCGAGGCCG AAGGCCGCGA CTGGCCCGCC GAGGGCTGGC ACGAACTCGA TGTCGGTGCA
CTCTATGCGC GCCACCAGGC CGGCGACATC GTGCTCGGCG AGGATTTCCG CTGCCTCGCC
GCCTTGCGCG TGCGGGGCGC GCGCAGCGAG GCCGAGGTCG GCCCGCCGCG GGGCGCCAGC
CACGACGCGA CGCAGCGTGC CGCCCTGCTG ATCGATGCCT GCCTGCAGGC CAGCGCCGCC
ACGCGCGAGG TCGACGACGG CCTGTTCCTG CTGGCCGGGG TGGGCGAGGT GGTGCTGCCG
CCCGCCGTGG CCTTGCCCGA GCGCCTGCGC GTGCGGCTGG TGCGCGAGGC TTGCGACGAG
GGCTATCGCT TCACGATCAT GCTGGCCGAT GCCGAAGGTG CGCCGGTCGG CCGGTTGCGC
GAGGTGCTGT TCCGGCGCGT GCAGGGGGCA CAGCGCGCCG CGCCGTTCCA CGAGACCGGC
TGGGAAGCCG TCGAGTGGCC GGCGCGCGCC GCCGCGCCCA TGCATGCGGC GCTGCCGGCC
CCGGACGCGC TGGATGGGCT CGAGGCTTCG GCCACCTGGG CCGCGCGCTT CGGGCTCGAC
AGCTACGACG CCTATCGCGG GCAGATCGAG CAGGCCTGCG CCGGCATCGT GGCCGACACG
CTAGCCGATC TCGGGCACGA GGGCGCCGAC ATGGAAGCCG CCGACGTCGC GCCGGCCCAG
CAGCGGCTGT TCGCGCACCT GCTCGCGGTG CGCGCGCGCG GCGACGCCGT TGCACTCGCG
GCGGGCGCCG CGCGGCTCGA CGGCGTCGCC GCGGCGTTCC CACAGTTCCA CGGCGAGACC
GAATTCCTGC GCCGCTGCGC CGCCGCCTTG CCCGAGGTGC TGCGCGGCCG GCGCAATCCG
CTCGAGGTGC TGTTCGGCGG TTCCGCGTTC GACGGCAGCG AGGCCGTCTA CGTCGATTCG
CCGATCGCGC GCGTGCTGAA CGGCCAGCTC GCGCAATGGG CCGCGCGGCT CGCCGCGCAA
CGGCCGCTGC GCATCGTCGA GATCGGCGCC GGCACGGGCG GCACCTCGCG CACCGTGCTC
GACGCGCTGC GCGGCCTGCC GGTGGCGCGC TACTGCTACA CCGACGTCTC GCCGCTGTTC
CTCGAACGCG CGCGGCCGCG CTTCGGCGAG GAGGGCTTCA TCGACTACCG CCTGCTCGAC
ATCGAGCAGC CGATCGCCGA CCAGGGTTTC ACGGCCGGCG AGTTCGACCT GGTGATCGCC
GCCAACGTGC TGCATGCGAC GCGCTCGATC GCCGACACGC TGCGCCAGGT GCGCGAGCTG
CTGGCGCCGG GCGGCTACCT GCTGCTGCGC GAGTGCACGG CGCAGCGCCT CAGCGCCGAC
CTAAGCTTCG GGATGACCGA GGGCTGGTGG CGCTTCGAGG ACCACGCGCT GCGCGCCGAC
TACCCGGTGC TGTCGGTCGC GCAATGGGAG CGGCAACTGG CCCTGGCCGG CTTCGAGCAT
ACGCTCGGCC TGCCGCCGAG CGAGGCCAGC GCCGAGGCGC TGATCGTCGC GCAGGCCTCG
GCCGTCGATC GCGCGGAGCA CTGGCTGGTG GTGCACGACG GGCAGGGCGT CGGCTGCGTC
GCGCAGCTCG CGCACGAGCG GATCGCGTGC CGCGAGCTGT CCTGGGCCGA GGCGCTGGAG
GCCGATCCGG CGCGCGAAAG CTACCAGCAC ATCGTCTGCT TCGCCGATGC CGGCGAGCGC
GACAACGCCG ATCCCGTCGC GGCGGCCACC GCGCAGTACG AGGCCATGAT CGCGCTGTGC
CGGCGCTGGC TCGGCCCCGA GGCCGCGCCC GGCGCGCGCC TCTGGTGCGT GACGCGCCAG
GCCGAGCGCG CCGTCGATGC CGACCGCGTC GACGGGCTCG GCCAGTCGGT GGCGGCCGGC
GTGCTCAAGT GCGCCGCGCT GGAATTCCCG GGCCGCGTCG CCGGCCTGGT CGATCTGGAG
GCCGAGCCGG CCGATTTCGC CTCGCTCATC GCGCATTGGC GCGAGCCGGG CGAGCTGCGC
TGCTTCGCGC TGCGCGGCGG CCGGCCCCAT GTGCCGCGCC TGCGGCCGCT CGATGCCGGC
GCGCTCGGTG CTTCGTCGTT GGCCGGCGGC GCTGCCTTCG ACGGCACGGT GCTGATCACG
GGCGGTTTCG GCGGCATCGG CCTGGCGCTG GCGGACACGC TGGCCGCGCG CGTCGAGACG
CTGGTGCTGG TCGGGCGCCA GGTCGGCGGT CCCGAGCGCG AGGCGCAGCT CGCCGCGCTG
CGCGAACGCG GCGCGCGCGT GATCGCGCTG GCCGCCGATC TCGCTGACGA GGCGCAGGTC
GCGGCGCTGT TCGCGCGGCT GGTCGCCGAG GGCGTGGCGG TCTCGCACCT GATCCACGCG
GCCGGGGTGG GCGGCAGCCT GGCGCTGGCC GCGAGCGGGC GCGGGGAACT GCGCGAGGTG
GTCGACGCGA AGCTGGCCGG CACCTGGCAT CTGCACCGGC ATGCCGGCCC GTCGCTGAAG
TCCTTCACCG TGCTCTCGAC CATGCTCGCA CTGTGGGGCG CGCGCGAGAA GGCCCACTAC
ACGCTGGCCA ATCACTTCGC CGAGCGCGTC GTCGAATGGC GCCGCGCGCG CGGGCTGCCG
GCCTCGATCG TGCACCTGGG CCCGATCGAC GGCGGCATGC TCGACGCGGC CGGCAAGGCC
GCCGCGGCGC GCGTCGGGGT GCGCAGCTTC ACGCTGCGCG AGCTGGCCGG CTGGCTCGCC
GCGCCGCTGC CGCGCGCCGG CATCGCGCTA CTCGACATCG ACTGGGCCCG CTTCCGGCCG
ATCTACCGCC ACGGCTGGCT CGACGCGCTG TTCGCCGAAC TCGGCACGCC CGCCGACGGC
GGTGCGGCCG GTGCCAAGGC CGCCGATGGC GCGGCCGCGT TCCGGCGTGC CTACGCGGCG
GCCGGCTACC GCGAGTCGAT GCTCGACGAA CTGCTGCACG CGCTGCTGCG CGAGGTGCTG
GGCCTGTCGG GCAACTTCGC GGCCTACGCC GGCACGGGCT TCCACGATCT CGGCATGGAT
TCGCTGCTGA CCCTGTCGTT CGCCGAGAAG CTCGGCGCGC GCGTCGGCTT GCCGGTGTCC
TCGGTCGACG TGTTTGACAA CGCGAATCCG GCGCGCTTGC GCGGCTGGCT CGCGGCGCGC
CTGAAGGCGC TCTACGCGGC CGCGCCGGCC GCTGCCGGCA GCACCGGTAA CGCTGGGGCT
ACTGGTGCCA CCAGCGCCTT CAGTGCCGCC GATGCCACGC ATCCGGACGC GACCGACGCG
CCGCCGCCCG CCGGCCCGCT GGCCGCCACT GTCTCCCCCA CCGCGAGCGA CGCCGCCGGC
GATGCCGTGA CCGATGAAAT CGAACGCGAG CTGCAGACGA TGCAGGCGCT GCTGGAGGAC
CGTTGA
|
|---|
| Protein sequence | MTDMDKDLLL QSIQTIRELK TRLAQAEQGH HEAVAVAVVG VSLRFPGGVT DLDSYWALLR
EGRSGVIEVE PERWSNRQFV DPDYAAAGKL VTPYAGLLEH IYDFDAEFFG LSALEAENLD
PQQRLLLEQS WLALEDAGYD IGRLRGSDTG VVVGIGSQDY GMALLADPAH ANPYVASGNS
LSMAAGRLSY FFDFSGPSLS IDTACSSSLV AVHEACRRLQ LGECGLALAA GVNAMLTPHA
GINFSRARML STERDCHTFD ARAKGYVRGE GCAVLVLKRL ADAQADGDRI HAVIRGVAIN
HDGHSSGLTV PNGSAQRAVI RAALRRAGVA PAEVDYAEAH GTGTRLGDPI EAHAIADVYG
EAREAGRPLV IGAVKANLGH LEAAAGLAGL IKAMLVVRHG EAPPQPGFET LNPAIGWDTA
KFKVVRQPTP LRPADGRPWL AGVSSFGFSG TNAHAIVAAA PLAAEEGEPA AEPPGGLHVL
ALSAKTPEAL GRHVEEVAAY LAGKPAAELA AIAQTSTCRR VALGERIAVT GRDGAELAAR
LRRALAERAP RRAPGRIVLY LSSADLPAGT ADPAALAALH RGWLARCAGF GLFPDRVVLR
GIAPAFVRAW LWQHAEPTGL AYLDETAGDA LRGFSTSETA AGEVIAAEAA AAELFEDAEV
LALGAPPFAL PASSSTRWLR LDDEAALRTT LAALFTAGIE IDWTPLDARR HRVVRDFPRR
PFARRSFRSP RIDAALAGAD APRESESAIH PLVRDRLAQP DGRVSCRLRT ATAWLDFIDG
HRVQGHRLLP ASLLLELMRT AAADARGAAV TLSDARFRRP FDLDAAACDY LVQVDAPGEG
ARVALWGRPA DDAAAPWVEH ASAACRLAET TDAQDAPPAE VEAEGRDWPA EGWHELDVGA
LYARHQAGDI VLGEDFRCLA ALRVRGARSE AEVGPPRGAS HDATQRAALL IDACLQASAA
TREVDDGLFL LAGVGEVVLP PAVALPERLR VRLVREACDE GYRFTIMLAD AEGAPVGRLR
EVLFRRVQGA QRAAPFHETG WEAVEWPARA AAPMHAALPA PDALDGLEAS ATWAARFGLD
SYDAYRGQIE QACAGIVADT LADLGHEGAD MEAADVAPAQ QRLFAHLLAV RARGDAVALA
AGAARLDGVA AAFPQFHGET EFLRRCAAAL PEVLRGRRNP LEVLFGGSAF DGSEAVYVDS
PIARVLNGQL AQWAARLAAQ RPLRIVEIGA GTGGTSRTVL DALRGLPVAR YCYTDVSPLF
LERARPRFGE EGFIDYRLLD IEQPIADQGF TAGEFDLVIA ANVLHATRSI ADTLRQVREL
LAPGGYLLLR ECTAQRLSAD LSFGMTEGWW RFEDHALRAD YPVLSVAQWE RQLALAGFEH
TLGLPPSEAS AEALIVAQAS AVDRAEHWLV VHDGQGVGCV AQLAHERIAC RELSWAEALE
ADPARESYQH IVCFADAGER DNADPVAAAT AQYEAMIALC RRWLGPEAAP GARLWCVTRQ
AERAVDADRV DGLGQSVAAG VLKCAALEFP GRVAGLVDLE AEPADFASLI AHWREPGELR
CFALRGGRPH VPRLRPLDAG ALGASSLAGG AAFDGTVLIT GGFGGIGLAL ADTLAARVET
LVLVGRQVGG PEREAQLAAL RERGARVIAL AADLADEAQV AALFARLVAE GVAVSHLIHA
AGVGGSLALA ASGRGELREV VDAKLAGTWH LHRHAGPSLK SFTVLSTMLA LWGAREKAHY
TLANHFAERV VEWRRARGLP ASIVHLGPID GGMLDAAGKA AAARVGVRSF TLRELAGWLA
APLPRAGIAL LDIDWARFRP IYRHGWLDAL FAELGTPADG GAAGAKAADG AAAFRRAYAA
AGYRESMLDE LLHALLREVL GLSGNFAAYA GTGFHDLGMD SLLTLSFAEK LGARVGLPVS
SVDVFDNANP ARLRGWLAAR LKALYAAAPA AAGSTGNAGA TGATSAFSAA DATHPDATDA
PPPAGPLAAT VSPTASDAAG DAVTDEIERE LQTMQALLED R
|
|---|
| |