Gene Bamb_5503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_5503 
Symbol 
ID4314392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp2570248 
End bp2570736 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content61% 
IMG OID638153345 
Productaromatic-ring-hydroxylating dioxygenase, beta subunit 
Protein accessionYP_777384 
Protein GI115360246 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG5517] Small subunit of phenylpropionate dioxygenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.361492 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGAAA ACCTGACGGA AGACATGAAG ACGTGGTTCG AGATTTACAT GCTCCAGAAC 
CGCTACATCG GCCACCTCGA CAACGACCGG CTCGAACACT GGCCGGAAAT GTTCACCGAG
GATTGCACGT ACGAGATCGT GCCGAAGGAG AACGCGGATC TCGGGCTGCC GGTCGGGATC
GTCCATTGCA CGAACCAGCG GATGCTGCGC GATCGCGTGG TGTCGCTGCG GCACGCGAAC
ATCTATGAAG AGCACACGTA CCGGCACATG ACATCGGGTC TCACGATCGT CGCGCAGCGC
GACGGCGAGA TCGACACCGA GAGCAACTAC GTGGTCGTGC AGACGCGCAG CAACGGCGAA
TCGAACGTGT ACCAGGCCGG CAAGTACTAC GACACGGTCG TGCGCACGCC CGACGGGCTG
CGCTACAAGA CCAAGCGCGT GATCTACGAC ACGTCGCGCG TGCAGACGCT ACTCGCGACG
CCGATCTGA
 
Protein sequence
MMENLTEDMK TWFEIYMLQN RYIGHLDNDR LEHWPEMFTE DCTYEIVPKE NADLGLPVGI 
VHCTNQRMLR DRVVSLRHAN IYEEHTYRHM TSGLTIVAQR DGEIDTESNY VVVQTRSNGE
SNVYQAGKYY DTVVRTPDGL RYKTKRVIYD TSRVQTLLAT PI