| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4956 |
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| Symbol | |
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| ID | 4313847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1972136 |
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| End bp | 1973110 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638152799 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_776839 |
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| Protein GI | 115359701 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0364888 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCTA CTACTATTAC TACTACCCGC CCCGCCACCA CCGCCACCGC GGCGTCGCTG
AGCGACCTCG TGATCGAACG GGTGGGCTTC GGCCTGTTCG TGCTCGACCG CTCGATGACC
GTGCTGATGT GGAATCGCTT CATGCAGGAC CACAGCGGCA TCCCGGCTGC CGACGTGATC
GGCCGCAACC TGTTCGACTG CTTTCCCGAG CTGCCGCGCG CGTGGCTCGA ACGCAAGCTC
GAGAGCGTGT TCCAGCTCGG CAGCTTCGCG TTCAGCTCGT GGGAGCAGCG GCCCTACCTG
TTTCGCTTCG AGCACGACCG GCCGATCACC GGCGGCGTCG ACTACATGCA GCAGGACTGC
ACGTTCATGC CGCTCACGCG TGGCCGCGAA GTCGAGGCCG TGTGCGTGAC GATCTCGGAC
GTCACGCACG TGAGCGTGAT GCAGCGCGAG CGCGAGGAAG CAGTCGCGAA GCTGCGCGAG
CATGCGAATC GGGACGGCCT CACCGGCATC GCGAACCGGC GCTTCTTCGA GGCGCGGCTC
GGCGACGAGT TCGCGCGCTG GCAGCGCTAC GGCGGCGACC TGTCGATGCT GCTGTTCGAC
CTCGATCACT TCAAGACGAT CAACGACCGG TTCGGGCATG CGGCCGGCGA TGCGGTATTG
CGCGAGACGG CGCGCCGCGT CGCGTCGATC GTGCGCTCCC AGGACACGTT CGGCCGCTTC
GGCGGCGAGG AATTCGCGCT GCTGCTGCCG TGCACGAATC TCGACGAGGC GATGCGGGTG
GCGGACAAGG TGCGCGACGC TATCGGCAGC ACGCCGGTCG ACGCGGAAGG CGTCAGCGTG
CCGGTGACGG CGAGCGTCGG CGGTGCGTGC GCGACGGTGG GCGCGACGGC GCCCGACGTG
CTCGTCAACG AGGCCGACAC CGCGCTTTAT CGTGCGAAGC GGCTCGGGCG CGACCGGTCG
ATCGCGTACA CGTGA
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| Protein sequence | MTATTITTTR PATTATAASL SDLVIERVGF GLFVLDRSMT VLMWNRFMQD HSGIPAADVI
GRNLFDCFPE LPRAWLERKL ESVFQLGSFA FSSWEQRPYL FRFEHDRPIT GGVDYMQQDC
TFMPLTRGRE VEAVCVTISD VTHVSVMQRE REEAVAKLRE HANRDGLTGI ANRRFFEARL
GDEFARWQRY GGDLSMLLFD LDHFKTINDR FGHAAGDAVL RETARRVASI VRSQDTFGRF
GGEEFALLLP CTNLDEAMRV ADKVRDAIGS TPVDAEGVSV PVTASVGGAC ATVGATAPDV
LVNEADTALY RAKRLGRDRS IAYT
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