| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4892 |
|---|
| Symbol | |
|---|
| ID | 4313783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1895693 |
|---|
| End bp | 1896589 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638152735 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_776775 |
|---|
| Protein GI | 115359637 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0566089 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCATCC TGCTGCAAGG CATCATCGCC TATCCGGTTA CGCCGTTCTC CGCCGACGGC
GCCATCGCCC TGCCGGCGCT CGATGCGCTG ATCGAGCGCC TGATCGCCGA TGGCGTCCAC
GCGATCGCGC CGCTGGGCAG TACCGGCGAG AGCGCGTACC TGTCCGACGC CGAATGGGAG
GCGGTCGCCA CCGCGTCGAT TCGCGCGGTG CGCCGGCGCG TGCCGACCGT CGTCGGCATT
TCCGATCTCA CGACGGCCGG TGCGGTGCGC CGCGCGCGCT TAGCCGAACA GGCCGGCGCC
GATGCCGTGA TGGTGCTGCC CGTGTCGTAC TGGAAGCTCG GCAACGACGA GATCGTCGCG
CATTACCGCG CGATCGGCGA CGCCATCGGC ATCCCGATCA TGCTGTACAA CAACCCCGCG
ACGAGCGGCG TCGACATGTC GCCCGACCTG ATCGCGACGA TCTGCCGAAC CGTCGACAAC
GTGACGATGG TCAAGGAGAG CACCGGCGAC ATCGGGCGGA TGCACCGGCT CGCGCAGTTG
AGCGACGGAG CGATCCCGTT CTACAACGGC AGCAATCCGA TGGCGCTTGC CGCGCTGGCC
GCTGGCGCGG CCGGATGGTG CACGGCCGCG CCGAACCTGA ATGCCGCGTT GCCGATTGCG
CTGGTCGACG CGATGCGCGC GGGCGACCTG GCGCGCGCCA GGACGGTTTT TCACGCGCAG
TTGCCGCTGC TGCGGTTCAT CGTCGACGGC GGCCTGCCGG TGACCGTGAA GGCCGGGTTG
CGGCTGCGCG GCTTCGACGC GGGCGAGCCG AGGCGGCCGT TGCTGCCGCT CGGCGACGTG
CGCACGCGCG AGCTCGAACG CCTGCTCGCG GCACTGCCGG ACGGTGTGCC GGCATGA
|
|---|
| Protein sequence | MSILLQGIIA YPVTPFSADG AIALPALDAL IERLIADGVH AIAPLGSTGE SAYLSDAEWE
AVATASIRAV RRRVPTVVGI SDLTTAGAVR RARLAEQAGA DAVMVLPVSY WKLGNDEIVA
HYRAIGDAIG IPIMLYNNPA TSGVDMSPDL IATICRTVDN VTMVKESTGD IGRMHRLAQL
SDGAIPFYNG SNPMALAALA AGAAGWCTAA PNLNAALPIA LVDAMRAGDL ARARTVFHAQ
LPLLRFIVDG GLPVTVKAGL RLRGFDAGEP RRPLLPLGDV RTRELERLLA ALPDGVPA
|
|---|
| |