Gene Bamb_4853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4853 
Symbol 
ID4313744 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1852499 
End bp1854040 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content69% 
IMG OID638152696 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_776736 
Protein GI115359598 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAACG ACTGGGTCCG CCTGCCCGTC AATTACGGCG ACGTGCTGCG GCGCGCCGCC 
GAGTCGCTGT TTCGTACGTT CGAGGATTCG AGCGCGGGCA CGGTGGTCGT CGATCGCGAC
GCGCGCGTCG TGTGGATGAA CGAGCGTTAT GCGGCGCGTT TTGGATTCGC CGATCCGCAG
CAGGCGGTCG GCCTCGACTG CGAGGCGGTG ATTCCGAACA GCCTGATGCG CGAGGTCGTG
TCGAGCGGAC AGCCGATCCT GCTCGACATC ATGGAGACGG GCCGCGAGCC GCTCGTCGTC
ACGCGCCTGC CGTTGAAGAA CGAGGCGGGC GAGACGGTCG GCGCGATCGG CTTCGCGCTG
TTCGACCAGT TGAAGACGCT CACGCCGATC TTTTCCCGCT ACGCGCAGCT TCAGCAACAG
CTGATCGCGA CGCAGCGTTC GCTCGCACAG GCGCGCCGAG CGAAATACAC GTTTGCGAGC
TTCGTCGGCA CGAGCGCCGC GAGCCTCGAA ACCAAGCGGC AGGCGCGGCG CGCGGCGCAG
GTCGATTCGC CGGTGCTGCT GCTCGGCGAG ACGGGCACCG GCAAGGAACT GCTCGCGCAT
GCGATCCACG CGGCGTCGGC GCGCGCGCTC CAGCCGCTCG TGACCGTCAA CGTCGCGGCG
ATTCCCGACA CGCTGCTCGA AACCGAATTC TTCGGCGCGG CGCCGGGTGC GTATACCGGT
GCCGATCGCA AGGGGCGCGT CGGCAAGTTC GAGCTGGCCG ATCGCGGCAC GCTGTTTCTC
GACGAGATCG GCGACATGCC GCTGCCGCTG CAGGGCAAGC TGCTGCGCGT ATTGCAGGAC
AAGGAGTTCG AGCCGGTCGG CTCGAACCGG ATCGTGCGCG CGGATGTGCG GATCATCGCC
GCGACGTCGG CCGACCTGCC CGCGCTGGTC GAGGCCGGCC GCTTTCGCGC GGATCTCTAT
TACCGGCTCA ACGTGTTGAC GATTCACGCG CCGCCGCTGC GCGAGCGCGC GTCCGACATC
GCGGCGCTCG TCTACGCGAC GCTGGAAGAA CTGGCCGCGC AGCACGGCCG CGCCGCACAC
TGCGAACTGA CCGACGATGC GCTGCTGGTG CTGTGCGCGT ACCCGTGGCC GGGCAATGTG
CGCGAGCTGC GCAACACGCT CGAGCGTGCG CTGATGCTGT CGGATCGCTC GGTGATCGAC
GCGCGTGCGC TCGCGCCGTT CCTCGGGCCA GTGCGTGTGG CGCCCGACAG CGTGCCGGCG
GGCGGGCGGG TCGCGCCGTC GTCGGCCGGC CGCGATGCGG GCGACGCATC GGTTGCGCCT
GGTGCACCTG GTGCGCCGGT CGTTTCGTAT ACCGATGCAT TGGCCGCGTG GGAGCGCCAG
TTCCTGATCG ATGCGCTGGT CGCTTGCGAC GGCAAGGTGG TGGAAGCGGC CGCGCGGATC
GGCATCGGTC GGGCGACGCT CTACAAGAAA CTGGCGGCGC TGGGAATCGA CCGTTGGCAA
GCGGCGGCGG ATGCGCGCGG ACATGATGAG CGGCACCGGT GA
 
Protein sequence
MMNDWVRLPV NYGDVLRRAA ESLFRTFEDS SAGTVVVDRD ARVVWMNERY AARFGFADPQ 
QAVGLDCEAV IPNSLMREVV SSGQPILLDI METGREPLVV TRLPLKNEAG ETVGAIGFAL
FDQLKTLTPI FSRYAQLQQQ LIATQRSLAQ ARRAKYTFAS FVGTSAASLE TKRQARRAAQ
VDSPVLLLGE TGTGKELLAH AIHAASARAL QPLVTVNVAA IPDTLLETEF FGAAPGAYTG
ADRKGRVGKF ELADRGTLFL DEIGDMPLPL QGKLLRVLQD KEFEPVGSNR IVRADVRIIA
ATSADLPALV EAGRFRADLY YRLNVLTIHA PPLRERASDI AALVYATLEE LAAQHGRAAH
CELTDDALLV LCAYPWPGNV RELRNTLERA LMLSDRSVID ARALAPFLGP VRVAPDSVPA
GGRVAPSSAG RDAGDASVAP GAPGAPVVSY TDALAAWERQ FLIDALVACD GKVVEAAARI
GIGRATLYKK LAALGIDRWQ AAADARGHDE RHR