| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4504 |
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| Symbol | |
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| ID | 4313396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1454807 |
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| End bp | 1456624 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638152343 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_776388 |
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| Protein GI | 115359250 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACGCA TCATGAAAGC GCCGCGACCG GCGCGGGCGC GCGGCGCGCA GGGCGGCTGG
ACGATGCTCG CGGCGGCCGC GCTGCTGGCG CTGGGCGGTT GCGTGCCGTC GGGGTTCCTG
CCGTCGCTGT CGCTGCGCGC ACCGGCTGGC GACGCGCTCG CGCACACCGC GGGCCCCGGC
GTGGACGGCG CGTGGCCCGC ACCCGACTGG GTGAAGCAAC TGCAGGATCC GCAGCTCGAC
GAACTGGTGG CGGAGGCGTC GCGGAACAAT CCCGACCTGC AGGTCGCGCA AGCGCGGCTG
CGGATCGCGC AGGCGCAGCT TCGGCAATTC GATTCGCTGA CGGGGCTGAC CGGCACGGCC
GGCGCGACGG TCAGCCGCGC GCGGATGCCG AAGCCGGGCG ACGTCGCCGA CGTGTCCGTC
GGCGGCTATC GTGTGCCGGT CGAGATCTTC GGCGATCCGG TCGTGTCGCC GTCGTCGATA
TTCGTCGGGC TGACCTACCA GCTCGACCTG TGGGGCAGGA ACCGCGCGGC GACGAAGAGC
CTGATGTCGC TGCGCGACGC GACCGGCGTC GAGGCCGAGC AGGTTCGGCT CACGCTCGCG
GTCGCGATCG TCACCGTGTA TTGCCAGCTC GACCAGGCGT ACGCGGTGCG AGACCTGCTG
CAGCAGAAGC TGAAGATCAG CCAGCGCGTG ACGGCCGTGC TGCGCGAGCG CACCGCGCGC
GGCCTCGACA ACGCGTACGA CGCGAGCGAC GCGTCGATCA AGCGCACGCG CCTGCTCGAA
CAGATGGCGC TGAACGACGA GCAGATCAAG CTCGCGCAAT TGCAGCTCGG CGTGCTGTCC
GGTCGCGGGC CCGAGCGTGG GCTCTCGCTG CAGCGGCCGC GCGTCGGCGC GTTCCCCGGC
GGCGCGTTGC CCGCGCGGCT GCCGGCCGAC CTGCTCGGCC GCCGGCCCGA CATCGTCGCC
GCGCGCCTGC GTGTCGAAGC CGCGTTCGCG AATGCCGATT CGACGCGCGC GCAGTTCTAT
CCGGACGTGA ATCTCGTCGC GCTCGGCGGC GTGTTCGCGC TGACGCCCGC GTCGCTGTTC
TCGCGTGACG CGATCGCCGG CTCCGTCGGC CCAGCGATCT CGCTGCCGGT GTTCGATCGC
GGCCGGTTGA AGGCGAAGCT CGGTGCGGAC GTCGCGCAGG CCGACGTCGC GATCGGCCTG
TACAACAAGA CCGTCGACGA CGCGCTCGGG CAGGTCGCAC AGATCGTCAC GTCGCTGCAG
ACCGCGCAGA CGCTCGTCGC GCAGCAGCAG GACGCCGTCG CCGCCGCGCA GAAGATCGTG
CAGATCGCGG CCGACCGCCA TCGGCGCGGC GTGCTGATGC AGAAGGACGT CGATGTCGCG
GACCTCACGC TGATCGACGA GCGCGCGCAG CTGATCGCGT TGCTCGGGCG GCAGCGGACG
CTGCGCGTCG GGCTGGTCGG CGCGCTCGGC GGCGGGTTCG ATGCGAGCGC GGCGATGGCG
TCGGCATCGA CGTCGACGTC ACCGGTCGCG ACACGTACCG CGCAAGGCGC GCGGTCGAAG
CGCGGCGCGA TGACGAACGC GGCCGCTCGC AACGCGACGA ACGCCGGCAC GGAAGCGCGT
CGCGCGGCCA CGTCCGCCAA CGGCGCCGCG CCTATCGACC CGTCGGCGGC GCTCGTGACA
CCACGCAGTG CGGCAGCCGA TAGCGCGATC GTGAGCACCG GCACGCGCAG CGCGGCACGC
ATCGTCTCGT CCGACCCGCG CGTGAGCGCG ATCCCCCAGT TCCAGCATGA CCGCCTGATC
GTTACGCAAA GCGACTGA
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| Protein sequence | MERIMKAPRP ARARGAQGGW TMLAAAALLA LGGCVPSGFL PSLSLRAPAG DALAHTAGPG
VDGAWPAPDW VKQLQDPQLD ELVAEASRNN PDLQVAQARL RIAQAQLRQF DSLTGLTGTA
GATVSRARMP KPGDVADVSV GGYRVPVEIF GDPVVSPSSI FVGLTYQLDL WGRNRAATKS
LMSLRDATGV EAEQVRLTLA VAIVTVYCQL DQAYAVRDLL QQKLKISQRV TAVLRERTAR
GLDNAYDASD ASIKRTRLLE QMALNDEQIK LAQLQLGVLS GRGPERGLSL QRPRVGAFPG
GALPARLPAD LLGRRPDIVA ARLRVEAAFA NADSTRAQFY PDVNLVALGG VFALTPASLF
SRDAIAGSVG PAISLPVFDR GRLKAKLGAD VAQADVAIGL YNKTVDDALG QVAQIVTSLQ
TAQTLVAQQQ DAVAAAQKIV QIAADRHRRG VLMQKDVDVA DLTLIDERAQ LIALLGRQRT
LRVGLVGALG GGFDASAAMA SASTSTSPVA TRTAQGARSK RGAMTNAAAR NATNAGTEAR
RAATSANGAA PIDPSAALVT PRSAAADSAI VSTGTRSAAR IVSSDPRVSA IPQFQHDRLI
VTQSD
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