| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4058 |
|---|
| Symbol | |
|---|
| ID | 4312953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 978755 |
|---|
| End bp | 979675 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 638151899 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_775945 |
|---|
| Protein GI | 115358807 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.103107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.387119 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTGGG ACGACCTCCG CTATTTCCTC GCGGTGATGC GCGGCGGCAG CCTGTCGGCC
GCCGCGCGGG CGCTGCAGGT CCAGCATTCG ACGGTCGCCC GGCGCATCGA CGCGCTGGAA
TCCGCGCTCG GCATCCGGCT GTTCGACCGG CTGCCGCGCG GCTGGCCGCC GACCGACGAA
GGGCTGCATC TCGCCGAGCA TGCAGCCCGC GTCGAGGCCG ACGTGCATGC GTTCGCGCGC
GCCGCGCAGG GCGCGGCGGC GCTCGATGGC GTCGTGCGCG TGTCGGCGTC GCCGGTATTT
GCGAGCCACT TCCTCGCGCC GCGGCTCGCC CGCGCGCAAC GCGCGTGGCC CGCGCTGCGG
ATCGATCTGA TGGGCGAGAT GCATGCGGCC AACCTGTACG CACGCGAAGC CGACCTCGCG
GTGCGACTGT CGCGACCGAG CGAGCCGGGA CTGGCCGCGC GCCGGCTCGG CACGATGCGC
TTCGCGCTGT GCGCGTCGCC CGAGCGGGCC GCCGAGCCGC CCGACACGTG GGCATTCCTC
GGCTACGACG ACGCACTCGC GCAGATGCCG CAACAGCAGT GGCTCGAACG CTTCGCGGCC
GGCCGCCGCT TCGCGTTCGT CGCCAACGAT CTGGCCGCGC TGCATCGTGC GTGCGTGGCC
GGCGCGGGGA TCGCGTTGCT GCCGCGCTTT CTCGTCGACG CACCGGTAAT GGACGCGGGC
GCCGACGCGG GCGGGCCGGC CTCGGCCGAT CCGTCGCTGC CCGCCACCGC GGCGCTCGTC
GAACTCACGG CGGCGCCGCG TTGCGATGTC GAGCGCGAGA TCTGGCTCGT CGTCCACCCG
GACGTACGGC GCTCGCCGCG CGTGCAGCGC GTCGCGGACG CGATCGCCGA CGCGGTGCGC
GCTGCGGACG GCCACCTCTA A
|
|---|
| Protein sequence | MSWDDLRYFL AVMRGGSLSA AARALQVQHS TVARRIDALE SALGIRLFDR LPRGWPPTDE
GLHLAEHAAR VEADVHAFAR AAQGAAALDG VVRVSASPVF ASHFLAPRLA RAQRAWPALR
IDLMGEMHAA NLYAREADLA VRLSRPSEPG LAARRLGTMR FALCASPERA AEPPDTWAFL
GYDDALAQMP QQQWLERFAA GRRFAFVAND LAALHRACVA GAGIALLPRF LVDAPVMDAG
ADAGGPASAD PSLPATAALV ELTAAPRCDV EREIWLVVHP DVRRSPRVQR VADAIADAVR
AADGHL
|
|---|
| |