| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4004 |
|---|
| Symbol | |
|---|
| ID | 4312899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 915182 |
|---|
| End bp | 916543 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638151845 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_775891 |
|---|
| Protein GI | 115358753 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.2264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTCGC CGCACACACC CGGAACCCGA TGGCACAATC ACGGTCCTTT CATGTGCCCT
TCATCGGGCG CGCGCCGCAT CGCGGCGCAG ATTCAACGCA CGAGAAAGAC CCTGCCTGCC
CTTATGACCC TGAACGAATC CTGGTTTGCG CCGCTCGTCG GCCTCCTCAT CCTGCTCGCC
GCCGCCGGCG CGATCACCGC CGCCGTCCAT TTCCTGCTGT TCCGCGTGGT CGCGCGCCTC
GCGCGGCTAT CGGCAACGCG CATCGACGAC GCGCTCTTCG AATTCGGCGC ATTCAAGTGG
CTGAACCGCA TCGTGCCGTT CGTCGTGATC AAGCTCGGGC TCGCGGCAGT GCCCGGGATT
CCGGCCGCGG CCGCGCAGGC CGCCGACAAG GTGCTGTTCG CGCTGATCGT GTTGCTGCTG
TCGATGACGA TCAGCGCGAC GCTGTCCGCG CTCGAACACA CGCATCGCAT GAGCCATCGC
GACCAGCCGC GCCTGTCGCT CAAAGGCGCG ATGCAGCTCG TCAAGCTCGT GATGTTCATC
ACGGCCGCGC TCGTCGTGAT CGGCGACGCG ACCGGCAAGC AGATCGGCCT GCTGCTGTCG
GGCATCGGCG CGATGTCGGC GGTGCTGATG CTGATCTTCA AGGACACGCT GCTCGGCCTC
GTCGCCGGCG TGCAGCTGTC GTCGAACGAC ATGCTGCGAA TCGGCGACTG GATCACGATG
CCGTCGGCCG GCGCGGACGG CACCGTCATC GACATCACGC TGAATACGGT GAAGGTCGCG
AACTTCGATC ACACGATCAT CACGGTGCCG ACGTGGAAGT TGATCACCGA GAGCTATCAG
AACTGGCGCG GGATGACCGA AGCCGGCGGG CGCCGCATCA AGCGCGCGCT GTTCATCGAC
GCGACGAGCG TCCGCTTTCT CGACAACGAC GAGATCGCAC GGCTCGAACG CCTGACGCTG
CTGAAGGACT ACCTGGAAGA CAAGGTCGAC GCGATCGCGC AATGGAACGG CACGCTCGGC
ACGGCGGGCG AATGCCCGGC GAACCGCCGC CAGCTGACGA ATCTCGGCAC GTTCCGCGCG
TACGTCGCGA ACTACCTGAA GGGCCATCCG CGAATCCGCC GCGACATGAC GTGCATGGCG
CGCCAGCTGC CGCTGACGGC GGAAGGCATT CCGCTCGAAC TGTACTGCTT CACCGACACG
ACGAGCTGGG TCGACTACGA GACGATCCAG GCCGACCTGT TCGATCACCT GATCGCGGTG
CTGCCGGAAT TCGGGCTGCG CGTGTACCAG CACCCGTCGG GCTTCGACAT GCGCCGGATG
GCCGGCGTGG CGCAAGGCGA ACAGGCGCCG CACGCGCAGT AA
|
|---|
| Protein sequence | MHSPHTPGTR WHNHGPFMCP SSGARRIAAQ IQRTRKTLPA LMTLNESWFA PLVGLLILLA
AAGAITAAVH FLLFRVVARL ARLSATRIDD ALFEFGAFKW LNRIVPFVVI KLGLAAVPGI
PAAAAQAADK VLFALIVLLL SMTISATLSA LEHTHRMSHR DQPRLSLKGA MQLVKLVMFI
TAALVVIGDA TGKQIGLLLS GIGAMSAVLM LIFKDTLLGL VAGVQLSSND MLRIGDWITM
PSAGADGTVI DITLNTVKVA NFDHTIITVP TWKLITESYQ NWRGMTEAGG RRIKRALFID
ATSVRFLDND EIARLERLTL LKDYLEDKVD AIAQWNGTLG TAGECPANRR QLTNLGTFRA
YVANYLKGHP RIRRDMTCMA RQLPLTAEGI PLELYCFTDT TSWVDYETIQ ADLFDHLIAV
LPEFGLRVYQ HPSGFDMRRM AGVAQGEQAP HAQ
|
|---|
| |