| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3925 |
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| Symbol | |
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| ID | 4312821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 812539 |
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| End bp | 814323 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638151767 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_775813 |
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| Protein GI | 115358675 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCATGC TCGGACTCAC GTCGAAGCTG TCGGTGCTGT TCGCGTGCAT CGGCGTGATC
GCGTCCGGCA CGACCGGCTA CTACACCTAC CGCGCGAACC GGACGATGCT CGTGCAGGAA
GCGCAGCACA GCCTGCTGAT GTCGACGCAC TTGCTCGGAC AGCGCTTCAC GACCGCCCTG
TCCGACGTGG CCGACGATGC GCTCGTGCTC GCGCAATTGC CGTCGTCGGT GCTCGTCGCC
GGCGGCGACA GCGCCGATCG CGCGCCGCGC ACGCGGCTCG AGCACGTGTA TCGCAGCTTC
ATGAGGAATC ACCCCGAGTA TCTGCAGATC CGGTTGATCG CGCGCGGCGA CTACGGGCTC
GAACGGATCC GGGTCGATCG CGACGCGCGC GGCGTCGTCG TGCTGCCGGA GAATGCATTC
CAGGAGAAAG GGCAGTTTTC CTACGTGATC GATACGCTCG CGACGGCGCC CGGTCATATC
TACCTGTCGC CGATCGAAAT CAATCACGAG ACCGGTTCGC ATGCGGCCGA AGGGCTGCCG
ATCCTGCGCG TGGGCACACC GGTGGTCGAC ACGTTCGGCC AGGTCGTCGG CGCGCTGGTC
GTCGACATCG AACTGTCGCG CGTGTTCGAC CGGCTCGAGC GCGATTTGCC GGAAGACTAC
GTGGTGTATC TCGCGAACGA GTGGGGCGAT TTCATCGTGC ATCCCGATCC GTCGCAGACG
TTCGGTTTCG ATCGCGGGCG GCGCGTGCTG ATGCAGGACA GCTTTCCCGC CACGCGGCTG
CTGTTCGTCG GCATGCGCAC GAACGTGACG CTCGACGGTC TCGCGCAGCC CGACGATGCG
CCGGGCCAGA TGTTCGCGTT CGTGCGCACG CCGTTCGGCA ACAGCGAGGG CAACCGCTTC
GTCGTGCTCG GCATGGCGCG TCCGCTCACC GACGTGCTGG CGCCGGCCGC GATTCTCGGC
GAACGGATCA TCCGGATGGT GCTGTTGCTG AGCGTGGCGG CGGTGATTCT CGCGATCCTG
TTCGCGCGCG CGATCACGCG GCCGTTGCAG ATGCTCGCGC GCGCGGCCAC GCACGTGTTC
GACGATCCGG CCGCCGAACG GCTGCCCGTT GCACGGGCCG ACGAGATCGG CGTGCTGGCG
CGCTGTTTCG ACAGCATGCG CGTCGAGATC CGCACGCAGG TCGCGATGCT GCGCGCGAAG
CAGCTCGAGC TCACGCACCT CGCCGGTCAC GATCCGCTGA CCGGTCTGCC GAACCGCCTG
TTGTTCATGG AGCATCTCGA TGCCGCGATC CGGCATGCGG CCGCCGCGAG CGAGGGGCTG
GCGGTGATGT TCGTCGATCT CGATCGCTTC AAGCAGATCA ACGACCAGCA TGGACATGCG
GCCGGCGATC GCACGCTCGT CGCGGTCGCG AAACGGCTGA ACCAGGTGCT GCGCAGCGGC
GACATGGCCG CGCGGCTCGG CGGCGACGAA TTCATCGTGC TGCTGTCGGA CGTGCGAGCG
CCGGCGGTGA TCGGCGATAT CGCGTCGCGT ATCCAGATCG TGATGGCCGA GGAACTGGAG
TTCGGCGACC GGCTGCTGGC CGTGGGGGCG AGCATCGGCG TCAGCGAATA TCCGGCCGAT
GGCGCGTCCG CCGAGGAACT GCTGGTGAAG GCCGACGCGG CGATGTATGC GGCGAAGGCG
TCCGCGCAGT GCGCGTGCGT GCGTTATCAG GAGCTGCTGG GTGGCGGCGT CGGTGGCGTT
GACGCAGATG CGGCCGGCCG CATGGCGGCG GGTGGCAGCC GCTGA
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| Protein sequence | MIMLGLTSKL SVLFACIGVI ASGTTGYYTY RANRTMLVQE AQHSLLMSTH LLGQRFTTAL
SDVADDALVL AQLPSSVLVA GGDSADRAPR TRLEHVYRSF MRNHPEYLQI RLIARGDYGL
ERIRVDRDAR GVVVLPENAF QEKGQFSYVI DTLATAPGHI YLSPIEINHE TGSHAAEGLP
ILRVGTPVVD TFGQVVGALV VDIELSRVFD RLERDLPEDY VVYLANEWGD FIVHPDPSQT
FGFDRGRRVL MQDSFPATRL LFVGMRTNVT LDGLAQPDDA PGQMFAFVRT PFGNSEGNRF
VVLGMARPLT DVLAPAAILG ERIIRMVLLL SVAAVILAIL FARAITRPLQ MLARAATHVF
DDPAAERLPV ARADEIGVLA RCFDSMRVEI RTQVAMLRAK QLELTHLAGH DPLTGLPNRL
LFMEHLDAAI RHAAAASEGL AVMFVDLDRF KQINDQHGHA AGDRTLVAVA KRLNQVLRSG
DMAARLGGDE FIVLLSDVRA PAVIGDIASR IQIVMAEELE FGDRLLAVGA SIGVSEYPAD
GASAEELLVK ADAAMYAAKA SAQCACVRYQ ELLGGGVGGV DADAAGRMAA GGSR
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