| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3805 |
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| Symbol | |
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| ID | 4312701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 675709 |
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| End bp | 677016 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638151647 |
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| Product | shikimate transporter |
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| Protein accession | YP_775693 |
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| Protein GI | 115358555 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.424485 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.688015 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACCCA CCTTCGATAC CCTCGACGCC GCCGCCGGCG CCCGCGCGCG CAGCCAGGCC
CGCAAGGCCG CGATCGGCAG CTTTGTCGGC GCCGTCGTCG ACTGGTACGA CTTCCTGCTG
TACGGGATCG TCGCCGCGCT CGTATTCAAT TCGGAATTCT TCCCGAAGAT CAGCCCGACC
ATGGGCACGC TCGCGGCGTT CGCGACCTTC GGCGTCGGCT TCCTGTTCCG TCCGCTCGGC
GGAGTCGTGT TCGGCCATTT CGGCGACCGC CTCGGCCGCA AGCGGATGCT CGTGCTGACC
GTGATGCTGA TGGGGCTGTC GACCGTCGCG ATCGGCCTGC TGCCGGGTTT CGCAACGATC
GGCTGGTGGG CGCCCGTGCT GCTGGTGCTG ATGCGTGCGA TCCAGGGCTT CGCGGTGGGC
GGCGAATGGG GCGGCGCGGC GTTGATGGCC GTCGAGAGCG CGCCGAAGCA GAAGAAGGCG
TTCTACAGCA GCGGCGTGCA GGTCGGCTAT GGCGTCGGGC TCGTGCTGGC GACGGGAATC
GTGTCGATCC TGAGCCATAC GCTCGGCGAG GCCGCGTTCA AGTCGTGGGG TTGGCGCCTG
CCGTTCGTGT TCAGCATCGT GCTGGTGCTG ATCGGGCTGT GGGTCCGCAA GAGCATGGAC
GAGTCGCAGG AGTTCGTCGA GAAGGTGGAG CACGGCAACC GCAAGCTGCG CCTGCCGGTG
CTCGAAGCGC TGACGCGCCA TCCGAAGGCG TTCCTGCTGA TCGTCGCGCT GCGGCTCGCC
GAGCTGTTCA CGATGTATAT CGTCACGGCA TTCGCGCTCA GCTATTCGAC GTCGAACCTG
GGCCTGTCGC GCGACCTGTT CCTGAACATC GGCCTGCTGG TCGGCGCGGT GAGCTGCGTG
ACGATCCCGT GCTTCGCCTG GCTCGCCGAC CGCTTCGGCC TGCGCCGCAT CTACCTGATC
GGCGCGGTGA TCGGCCTCGT GTCGGCAGTG CCGTTCTTCG TCGCGCTGGA GTCGCGTTCG
ATCGCGTGGA TCGTCGTGTT CTCGATCCTG TTGGCCAATG CCGCGCACGA CATGGTCGTG
AGCGTCCAGC AGCCGCTCTT CACCGAGCTG TTCGGCGCGG AATACCGCTA CAGCGGCGCG
GGCGTCGGCT ATCAGTTCGC GAGTGTGGTC GGCGGCGGGT TCACGCCGTT CATCGCAGTG
GCGCTGGTCA GCATGGCCGG CGGTTCGTGG CACTTCGTCG CCGCTTATCT CGCGGTGGGC
TGCCTGATCT CGCTGGTGGT CGCCGCGCGG ATGCGGGCGG CGCAGTGA
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| Protein sequence | MTPTFDTLDA AAGARARSQA RKAAIGSFVG AVVDWYDFLL YGIVAALVFN SEFFPKISPT
MGTLAAFATF GVGFLFRPLG GVVFGHFGDR LGRKRMLVLT VMLMGLSTVA IGLLPGFATI
GWWAPVLLVL MRAIQGFAVG GEWGGAALMA VESAPKQKKA FYSSGVQVGY GVGLVLATGI
VSILSHTLGE AAFKSWGWRL PFVFSIVLVL IGLWVRKSMD ESQEFVEKVE HGNRKLRLPV
LEALTRHPKA FLLIVALRLA ELFTMYIVTA FALSYSTSNL GLSRDLFLNI GLLVGAVSCV
TIPCFAWLAD RFGLRRIYLI GAVIGLVSAV PFFVALESRS IAWIVVFSIL LANAAHDMVV
SVQQPLFTEL FGAEYRYSGA GVGYQFASVV GGGFTPFIAV ALVSMAGGSW HFVAAYLAVG
CLISLVVAAR MRAAQ
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