| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3479 |
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| Symbol | |
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| ID | 4312375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 278884 |
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| End bp | 281421 |
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| Gene Length | 2538 bp |
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| Protein Length | 845 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638151321 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_775367 |
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| Protein GI | 115358229 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.380247 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTGT TTGACGCACC ACGGACGCTG TCGGTTTCCG GCGCGGCTCT GCCGATGTAC
GGTGATCGTC CGATTCTCAC GCCGGTCAAG CTTACCGGTG GCGAGACGAT CGGCGAGTTG
TTCGAGTACA CGCTCGAACT GAAAACGCCG GATGCGCTCG GGTTTTCGCA GAGCATCGCG
GCGAATGTCA AACTCGACAA GCTGATCGGC ACGGAAGTGA CCGTGTCGAT TCAGCTCGAG
GGCAAGGGCC GCTTCATCCC CGGCTTGGTC GGGAGTGCCG GAATGGCCAA TCTTGGTGCG
GGCGCACGCG AGATCACCGG TATCGTCAGC CATGCGACGA TCGTGCGTGA AGACGGTCGT
TCGATCGTCT ATGCACTCAC GCTGCGGCCG TGGCTCTGGC ATGCGACCAA GAATTGTGAC
TGCCGAATCT TTCAGGATAT GTCCGTTGTC GAGATCACCG ATGCGGTGCT CTCGTCCTAT
CCGTTCCCGG TCGAAAAACG CCTTACCACC CCTCGGCCGA ACAAGGGATG GCCGAAGCGG
GACATTCAGC GTCAGCACTT CGAGAGCGAC TGGGCGTTCC TGCAGCGTTT GTGGGAAGAG
TGGGGCATCT ACTACTTCTT CGAGCATAGC GAAGGCAAGC ATCGCCTTGT GCTGTGCGAC
TCAATGGGTG CGCTCAAACC GCTAGGTGAA GCTTATGCAG CGCTTCGCTA CGAGCCGCCG
ACCGGTCGAC GGCTTGACGA GGAACACATT CAGGACTTCT CGGTCTCCCA TGCGCTGACA
ACGGGCGCGG TGACGAGCGT CGACTACGAC TATACGTTGC CGCGCGCGGA CCTGAAGGTG
ATGCGCGAAG ATCCTCGTGA CACCGGGCTC GCTCATCAGG AGCATTACAC ATGGGGCGAT
TACGCGCAGC CGCAAGCTGG CGCGGCTGGG CTCTCGGGCG ATCACAACGA GCCGCGCACG
GAAGCGGAGT ACCTGACTCT CGTGCAGATG GAGGCTTGGC GTTGTCAGGG GCTGAGGGCC
TATGGCAAAG GCAACCTGCG GGGCGTGGTG ACCGGGCAGT CGTTCGTGCT GTCGCATTAT
CCGCAGGATG CGGCGAATCG CGAGTATGCG GTGATCGCCT GCAAGCTGAC AATCGAGGAG
ATTGGCGAAG CGTCGGGATC CGGCCAGCGA TACCGTTGCG AAGCGGATTT TACGGTGCAG
CCGACCAATG AGCCGTTCCG GCTGCTGCGT ACGATTGCAA AGCCACGTAT GAACGGCGTC
GAATATGCCG TCGTGACGTG TCCGGAGAAT CAGGAAATCT GGACCGATGC ACAGGGTCGG
GTAAAGCTCC AGTTTCTGTG GGATCGGCTG GGCAAGAACG ATGAGCGATC GAGTTGCTGG
GTACGTGTGG CCGGTGCCTG GCATGGCGAT CAGTTCGGTG GAGTTTTCCT GCCGCGACGG
GGGCATGAAG TCGAGGTCGC GTTCGTCAAT GGTGATCCGG ATTTGCCGAT CATCGTGGGC
AGCGCGACCA ATGCGTTCAA CATGCCACCG TTCGACTTGC CGAAGAACCA GGCGCTCGCC
GGCTATCGTA GCCGCGAGAT CGGCGGTCGG CGCGCGAATA CGCTCGCCTT CGACGATACG
AACGGGAAAA TCCAGGCGCA TCTGTCGAGC GACGAAGGCG CCTCGCAGTT GAATCTTGGG
TATATCACAC GTATTGCCGG GAGTGCGGGG CGTCAGAATG AGCGTGGTCG GGGCTTCGAG
TTAGTAACGA GCCTGTGGGG CGTGGTGCGC TCGGCGATGG GAATGCTGAT TACGACTGAG
GCACGGCCGG ATACGCAGGG ACATGCCAAG GATATGGGTG AGACGGTCCG GCGACTCACG
GACGCGCGCG ACACCCACGA ACGTTTGGCC GAGCTGGCTC AGCAAAACTT GGCGCAGGAC
GCGAACGTCG ATCAAAGTGA GGTCACGGCC GCGTTGAGGG CCCAGAACGA TGCGATACGA
GGTGGAGCAA TGTCAGACGA TGCCCCGTTT CCGGAGTTTG TCGAGCCACA CCTGACGCTT
GCCAGTCCAG TTGGCATCCA GACAACAACA GCGGGTAGCA CGCACGTCGC AAGCGGTGAG
CACTTGGCGT TGACGACGGG CGAGCATTTT GGCATTGCGA CTGGACGATC ACTGTTTGCA
ACCGTCAAGG AAAAATTGCG GATCTTTGTC TACGAGGCGG GGATCAAGCT TATTGCCGGC
GCTGGCTCAA TCGACATCGA AGCCCTCAAG GACGCCATTA ACCTGATGGC GAAAATCAGG
ATCCGGCAGA CTGCGACACG GATTGAAATC TGGGCCGAAG AGGAACTATC GCTACGTGGC
GGGAAGAGTT TCATCACGCT CAATCATTCC GGTATTACCA ACGGCACGCC GGGACAGTGG
CAGTCCTATG CCGCAACTCA CCAGATGCCG GGACCGAAAA GTTCGCCGGG AGATGTGCCG
GCCGCCGAAC TAAAGGTCTG TGAGTTGAGT ACGGTCAAAG CGGCGGCTCA GCATGCGGCG
ATCGTGCCGC TTTCGTGA
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| Protein sequence | MALFDAPRTL SVSGAALPMY GDRPILTPVK LTGGETIGEL FEYTLELKTP DALGFSQSIA
ANVKLDKLIG TEVTVSIQLE GKGRFIPGLV GSAGMANLGA GAREITGIVS HATIVREDGR
SIVYALTLRP WLWHATKNCD CRIFQDMSVV EITDAVLSSY PFPVEKRLTT PRPNKGWPKR
DIQRQHFESD WAFLQRLWEE WGIYYFFEHS EGKHRLVLCD SMGALKPLGE AYAALRYEPP
TGRRLDEEHI QDFSVSHALT TGAVTSVDYD YTLPRADLKV MREDPRDTGL AHQEHYTWGD
YAQPQAGAAG LSGDHNEPRT EAEYLTLVQM EAWRCQGLRA YGKGNLRGVV TGQSFVLSHY
PQDAANREYA VIACKLTIEE IGEASGSGQR YRCEADFTVQ PTNEPFRLLR TIAKPRMNGV
EYAVVTCPEN QEIWTDAQGR VKLQFLWDRL GKNDERSSCW VRVAGAWHGD QFGGVFLPRR
GHEVEVAFVN GDPDLPIIVG SATNAFNMPP FDLPKNQALA GYRSREIGGR RANTLAFDDT
NGKIQAHLSS DEGASQLNLG YITRIAGSAG RQNERGRGFE LVTSLWGVVR SAMGMLITTE
ARPDTQGHAK DMGETVRRLT DARDTHERLA ELAQQNLAQD ANVDQSEVTA ALRAQNDAIR
GGAMSDDAPF PEFVEPHLTL ASPVGIQTTT AGSTHVASGE HLALTTGEHF GIATGRSLFA
TVKEKLRIFV YEAGIKLIAG AGSIDIEALK DAINLMAKIR IRQTATRIEI WAEEELSLRG
GKSFITLNHS GITNGTPGQW QSYAATHQMP GPKSSPGDVP AAELKVCELS TVKAAAQHAA
IVPLS
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