| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3462 |
|---|
| Symbol | |
|---|
| ID | 4312197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 259235 |
|---|
| End bp | 261625 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638151304 |
|---|
| Product | putative CheA signal transduction histidine kinases |
|---|
| Protein accession | YP_775350 |
|---|
| Protein GI | 115358212 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.924475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC GTCATCGCAT TACGCTGCTA GTCGTCCTGA CGTTTTTCGC GCTGTCCGCG
ATCGGCGTGT ACGCCGTGTA CCAGACGCGC AAGAGCGCGT CCGAGGTGCG TCAGGTTACC
CAGGGAATCG TGCCGAGCGC GCTCGCGTCG GCGGATCTCG TCGCCGACGT GAAGAACATC
CAGATCGCGA CGATGACGCT GGTATACGCG CCCGACGCGA ACACCGCCGC GCAGGCGCGC
GACGAGCTGA AGGCAAAACA GGCCGCACTG CGCGCGGCGC TCGACGCGCA GGCGAAGTCG
GCGGTCGGGC AGGCGCAGCA AGGCCTCGTC GCGCAGGCGA AGGACAGCGC CACGAACTAC
TTCGCGGCGA TCGACGATAC CGTGAAGATG AAGGCCGACG GCAAGCCGGA GATGGCCCAG
GCGTACCTGT TCGCGAACGT CGCGCAGTAT CGCGACGAGC TCGAAAGCAT CGTCGACACG
CTGCGCGTCG AGAAGAACCG CCAGAAGGAC GATGCGATTC GCGCGCTGAA CGGCATGCTG
TCGACCACGG CGACCGCGAT CGCGGCGGTC GCGGGCACGG TCGTCGTGCT GCTGACCGCG
CTCGGCTTCG TGCTGTACCG CCAGATCGCG CGCCCGCTGA TCGGGATGCA GACGGCGATG
AGCGAGATCG CGACGAGCCA GGACTTCACG CGCCGCGTGC CGGTGGGCCG GATGGACGAG
ATCGGCCATT CGATCGTCGC GTTCAACGGG ATGATCGAGA AGATCCAGGA GAACGCCGCG
CAACTGAAGC AGAAGACGGC CGACATCCAG GCAATGCTGC AGAACATGCA GCAAGGGATC
CTGACCGTCG TCGAAGGCGG CGTCGTGCAT GCCGAGTATT CGGCGTACCT CGAGACCATC
TTCGAGACGA GCGACATCGC CGGACGCGAC CTGATGGCGC TCGTGTTCGA CGCTTCGAGC
ATCGGCGCCG ATGCGCGCTC GCAGGTCGAG GCGGCCGTGC ACGCGTGTCT CGGCGAGGAC
AGCATGAACT TCGCGTTCAA CGAGCACCTG CTCGTCAACG AAGTCGCGAA GCGGATGCCG
GACGGCCGCG AGAAGTGGCT CGACCTGAGC TGGTCGGCGA TCACCGACGA GACCGACACG
GTCGTGCGGC TGATGCTGTG CGTGCGCGAC GTGACCGAGA TCCGTGAGCT GACCGCGCAG
GCCGGCGAGC AGCAACGCCG CCTCGAGATG ATCGGCGAGA TCCTGTCGAT CAGCCAGGAC
AAGTTCCATG ACTTCGTGCA CAGCGCGAAG GGCTTCCTCA GCGAGAACGA GCGAATGATT
CGCCAGCACG AACGCGCGGA TCACTCGATC GTCGCGGCGC TGTTCCGCAA CATGCACACG
ATCAAGGGCA ATGCGCGCAC CTACAGTCTT CAGCACCTGA CCAACATCGT GCATGAAGCG
GAGCAGGCAT ACGAATCGCT GCGCCGCGCG GACAGCGGCC CCGAGTGGAA CCGCGATGCG
CTGATGGACG ACCTGGCTCG CGTGCGCGAG GCGGTCGACC ACTACGCGAC GATCAACGCG
GTCACGCTCG GCCGCCACGG CGAGCCGACG GGGCCCGGCG GCGGCGGCTA CCTGATGGTC
GAGCGCGCGC ATATCCGCGA GAGCCTGCGC ATGCTCGATG GCGCCGATCC GGCGAACGCG
GGCGACTGGC TCGCGGCGCG CGATTCGGTG CGCCGCCTGT TGAGCCAGTT CGGCACGCAG
GGCATCGGCG ACGCGCTGGG CGGCGTGATC GAATCGCTGC CGTCGCTCGC GGCCGAACTC
GGCAAGCCGG CGCCCGTCGT GCATATCGAC AGCAACGGCC ATCGCGTGCG CAGCGAGATC
GGCGCGACGC TGAAGAACGT GTTCATGCAC CTGCTGCGCA ACGCGATCGA CCACGGGATC
GAAACGTCCG ACGAGCGTCG CGCGGCCGGC AAGGCGCCGG CCGGCAAGAT CGACATCGCG
GTCGACGTCG AGGACGGCGC GCTGCGTTTC GTGCTCGGCG ACGACGGCCG CGGCCTCGCG
CTCGACCGGA TTCGCGGGAT CGCGCGCGAA CGCGGGTGGA TCGACGCCGG CAACGAAGCC
GCGCTGACCG AAGAAGCGGT GGCCGAACTG ATCTTCCGTC CGGGCTTCTC GACCGCGCGT
GCCGTGACCG AAGTGTCCGG GCGCGGCGTC GGGATGGACG CGGTGCGCAA CTTCCTGAAG
CGCGACGGCG GCGACATTGC GCTGCGCTTC ACCGACGATC GTGTCGGCTC GCCGTATCGC
GCGTTCGAGA CGATCGTGTC GCTGCCGGCG CGCTTCGCGG CGGACGGCGC CGCACACCAC
GCCGAGCCGC ATGCGCGCGC CGGCATCGCG AACGTCGACG TGGCGGAGTG A
|
|---|
| Protein sequence | MTIRHRITLL VVLTFFALSA IGVYAVYQTR KSASEVRQVT QGIVPSALAS ADLVADVKNI
QIATMTLVYA PDANTAAQAR DELKAKQAAL RAALDAQAKS AVGQAQQGLV AQAKDSATNY
FAAIDDTVKM KADGKPEMAQ AYLFANVAQY RDELESIVDT LRVEKNRQKD DAIRALNGML
STTATAIAAV AGTVVVLLTA LGFVLYRQIA RPLIGMQTAM SEIATSQDFT RRVPVGRMDE
IGHSIVAFNG MIEKIQENAA QLKQKTADIQ AMLQNMQQGI LTVVEGGVVH AEYSAYLETI
FETSDIAGRD LMALVFDASS IGADARSQVE AAVHACLGED SMNFAFNEHL LVNEVAKRMP
DGREKWLDLS WSAITDETDT VVRLMLCVRD VTEIRELTAQ AGEQQRRLEM IGEILSISQD
KFHDFVHSAK GFLSENERMI RQHERADHSI VAALFRNMHT IKGNARTYSL QHLTNIVHEA
EQAYESLRRA DSGPEWNRDA LMDDLARVRE AVDHYATINA VTLGRHGEPT GPGGGGYLMV
ERAHIRESLR MLDGADPANA GDWLAARDSV RRLLSQFGTQ GIGDALGGVI ESLPSLAAEL
GKPAPVVHID SNGHRVRSEI GATLKNVFMH LLRNAIDHGI ETSDERRAAG KAPAGKIDIA
VDVEDGALRF VLGDDGRGLA LDRIRGIARE RGWIDAGNEA ALTEEAVAEL IFRPGFSTAR
AVTEVSGRGV GMDAVRNFLK RDGGDIALRF TDDRVGSPYR AFETIVSLPA RFAADGAAHH
AEPHARAGIA NVDVAE
|
|---|
| |