| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1988 |
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| Symbol | |
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| ID | 4311754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 2183996 |
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| End bp | 2184583 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638149805 |
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| Product | Type IV secretory pathway protease TraF-like protein |
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| Protein accession | YP_773878 |
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| Protein GI | 115352039 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATCG TTTCCACTTC ATCCGCCTCG CCGCGTCCTC GCTCACGCCT GCGCGCTCGT
CTCGTGCTGG CGGCCCTGAC CGCCTGCGGC CTCGCTGCGC TGGCCTGGGC GGCTTTCGTG
TCGCCGCTAC CTCGCCTGAC GTACAACCCA TCCGACAGCG TGGCGGTCGG CTGGTATCGC
ATCGAACCGT TCGACCCGCG CACCGCCACG CTGCCACGTC CGTTGTCCGT GGACAGCATC
GTGTTGATGC CCCTGCCAGC CGACGTCGCG GCACTCGCTG CGCAGCGCGG CTATCTGCCG
ACGCACGTTC CGCTGCTCAA ACGTGTGGGC GCGGTCGCAC CGCAACACGT TTGCAACTTC
GCTGGTCAGG TTCGCATCGA CGGCGTGCCT TCGGCCGCCG CACTGCCTGC CGACCAGCTG
GGCCGGCCGC TGCCATCCTT GCAGCTTTGC CGGCGCCTCG CGCCTGGCGA ACTGTTCTTG
TTGAGCGCAA CGAATCCGGC GTCTTTCGAC AGCCGGTATT TCGGCCCGGT CAACGCTGCT
ACCGTGATCG GCGTTGCGCA CCCCGTTTGG CTGGAGGCAC GCCCGTGA
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| Protein sequence | MTIVSTSSAS PRPRSRLRAR LVLAALTACG LAALAWAAFV SPLPRLTYNP SDSVAVGWYR
IEPFDPRTAT LPRPLSVDSI VLMPLPADVA ALAAQRGYLP THVPLLKRVG AVAPQHVCNF
AGQVRIDGVP SAAALPADQL GRPLPSLQLC RRLAPGELFL LSATNPASFD SRYFGPVNAA
TVIGVAHPVW LEARP
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