Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1935 |
Symbol | |
ID | 4310173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 2132477 |
End bp | 2134996 |
Gene Length | 2520 bp |
Protein Length | 839 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638149752 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_773825 |
Protein GI | 115351986 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000247834 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAATTA TCAAACGACC GTCTTCTTCT TCCGACCGGA ACGAACCTCA CTACACATTG CGCCGTTCGC CGTCGGGAGC CTACTACCCC GATGACGACA ACGGCGACGA CGATCGCCGT ACGCAGCGCC GTGGAGGCGG GGGCGGCGGT GGCCGCTCGT TCGGCTCGCG CGTCGCGCTG TGGTTCGTCG GACTGTTCGC GACGCTCGCG GTCGTCGGCG CGCTGATCGT CGGCTACGCA CTCGTCGTGA TGGCACCGCA ACTGCCGTCG CTCGATGCGC TGACCAACTA TCAGCCGAAG GTGCCGTTGC GCGTGTTCAC CGCCGATCAC GTGCTGATCG GCGAGTTCGG CGAGGAGCGC CGCAGCCTCG TGCGCTTCCA GGACATTCCC GACGTGATGA AGAAGGCCGT GCTCGCGATC GAGGACTACC GCTTCTACGA ACACGGCGGC GTCGACTTCC TCGGCATCCT GCGCGCGGGC GTGGCCGATC TGATGCACGG CGGCGCGCGC CAGGGCGCGA GCACGATCAC GATGCAGGTC GCGCGCAACT TCTTCCTGTC GAGTGAAAAG ACCTACACGC GCAAGATCTA CGAGATGCTG CTCGCATACA AGATCGAGAA GGCGCTGACG AAGGACCAGA TTCTCGAGCT GTACATGAAC CAGATCTACC TGGGCCAGCG CTCGTACGGC TTCGCGGCCG CCGCGCGCGT GTATTTCGGC AAGGACCTGA AGGACATCAC GCTCGCCGAA GCGGCGATGC TCGCGGGGCT GCCGAAGGCG CCGTCCGCGT ACAACCCGGT CGTCAATCCG AAGCGCGCGA AGGTGCGTCA GGAATACATC CTGAAGCGCA TGCTCGAGAT CGGCTACATC ACGCAGCCGC AGTACGACCA GGCGGTGAAG GAGGAGATCC GCGTGCGCAC GCCGGGCAAT CAGTATGCGG TGCACGGCGA ATACGTGTCC GAGATGGTGC GGCAGATGAT GTACCAGCAG TACAAGGACG AAACCTATAC GCGCGGGCTC ACCGTCACGA CGACGATCAA CTCGGCCGAC CAGGAAGCGG CGTACCAGGC CGTGCGCCGC GGCATTCTCG ATTACGAGCG CCGCCACGGC TATCGCGGGC CGGAAGGCTC GATCAACCTG CCGGCGGCCG GCGACGAGCG CGACGAGGCG ATTGACGATG CGCTCGCCGA TCATCCGGAC AATGGCGATC TGCAATCGGC GGTGGTGCTG GCGGCGTCGC CGAATGCGGT CGAGGTGCAG TTCGTCGGCG GCGCGACGAC GACGATCGGC CCGGCCGGGC TGCGCTTCGT GTCGGGCGCG CTGACTCAGC GCGCGAATGC CACGTTGAAG ATCAAGCCCG GTTCGATCGT GCGCGTGCTG AAGGATGGCA AGACGGGCTG GCAGGTCGTG CAGCTGCCGC AGGTCGAAGG CGCGCTCGTC GCGATCGCGC CGCAGGACGG GGCGATCCGC TCGCTCGTCG GCGGCTTCGA CTTCAACAAG AGCAAGTTCA ACCACGTGAC GCAGGCGTGG CGCCAGCCGG GTTCGTCGTT CAAGCCGTTC ATTTATTCGG CGTCGCTCGA CAAGGGCCTC GGACCGGCGA CGATCATCAA CGATGCACCG CTGTACTTCC CGCCGAGCGT GCCGGGCGGC ACCGCTTGGG AGCCGAAGGA CGACGACCAG CCGGATGGCC CGATGTCGAT GCGTACCGGC CTGCAGCGTT CGAAGAACCT CGTGTCGATC CGGATCCTCG CGTCGATCGG CACGCAGTAC GCGCAGCAGT ACGTGACGCA GCGCTTCGGC TTCGATCCGG CGAAGACGCC GCCGTACCTG CCGATGGCGC TCGGTGCGGG GCTCGTCACG CCGCTGCAGC TCGCGACCGG CTATGCGGTG TTCGCGAACG GCGGCTACAA GGTCGATCCG TACCTGATCG CCGAAGTCGA CGATGCGCAC GGGCAGGCGC TGCAGCGGTC GCAGCCGGTG GTCGCCGGCA GCACGGCGCC GCGCACGATC GAAGGTCGCA ACGCGTACGT GATGAACAGC CTGCTGCATA CGGTCGCGAC GGCCGGCACG GGCGCGGGCA CCAACGCGCT CGGCCGCGGC GACCTGCAGG GCAAGACGGG TACGACGAAC GATGCGAAGG ACGGCTGGTT CGCCGGCTAC CAGCAGTCGC TCGTCGCGGT CGCGTGGATG GGCTTCGATC AGCCGAAGAG CCTCGGCAGC CGCGAATTCG GCGCGCAGCT CGCGCTGCCG ATCTGGGTGA ACTACATGCG CACCGCGCTG AACGGCGTGC CCGAGCAGCA GATGCCGATG CCGGACGGCC TGACGACGGT CGACGGCGAG CTGTACTACG CCGATCGCAC GCCGGGCAAC GGCTTCGTCG GGAGCGTGGA CATCAACCCG GCCGAGAACG CAATCAGCGC GAACGACGCA CTCGGCTCGG CCGGCGCGGC CGGGCTTGCG CCGCCGCCCG TCACGCAGCA GGAGAAGCAG CAGATCATGG ACATGTTCGA GAACAAGTAA
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Protein sequence | MPIIKRPSSS SDRNEPHYTL RRSPSGAYYP DDDNGDDDRR TQRRGGGGGG GRSFGSRVAL WFVGLFATLA VVGALIVGYA LVVMAPQLPS LDALTNYQPK VPLRVFTADH VLIGEFGEER RSLVRFQDIP DVMKKAVLAI EDYRFYEHGG VDFLGILRAG VADLMHGGAR QGASTITMQV ARNFFLSSEK TYTRKIYEML LAYKIEKALT KDQILELYMN QIYLGQRSYG FAAAARVYFG KDLKDITLAE AAMLAGLPKA PSAYNPVVNP KRAKVRQEYI LKRMLEIGYI TQPQYDQAVK EEIRVRTPGN QYAVHGEYVS EMVRQMMYQQ YKDETYTRGL TVTTTINSAD QEAAYQAVRR GILDYERRHG YRGPEGSINL PAAGDERDEA IDDALADHPD NGDLQSAVVL AASPNAVEVQ FVGGATTTIG PAGLRFVSGA LTQRANATLK IKPGSIVRVL KDGKTGWQVV QLPQVEGALV AIAPQDGAIR SLVGGFDFNK SKFNHVTQAW RQPGSSFKPF IYSASLDKGL GPATIINDAP LYFPPSVPGG TAWEPKDDDQ PDGPMSMRTG LQRSKNLVSI RILASIGTQY AQQYVTQRFG FDPAKTPPYL PMALGAGLVT PLQLATGYAV FANGGYKVDP YLIAEVDDAH GQALQRSQPV VAGSTAPRTI EGRNAYVMNS LLHTVATAGT GAGTNALGRG DLQGKTGTTN DAKDGWFAGY QQSLVAVAWM GFDQPKSLGS REFGAQLALP IWVNYMRTAL NGVPEQQMPM PDGLTTVDGE LYYADRTPGN GFVGSVDINP AENAISANDA LGSAGAAGLA PPPVTQQEKQ QIMDMFENK
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