| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1679 |
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| Symbol | |
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| ID | 4311000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1855003 |
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| End bp | 1857546 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638149494 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_773570 |
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| Protein GI | 115351731 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGGTG CCATTCGTGG CCCGCGCGGC CTCTTCGCGC TCGGGCTGTC CGCCGTCGCG
AGCTGCATGC CGTGCGCCGC CGCCACCAAC CCGGGCAACA CCGCACCCGA CACGGTCGAG
TTCGACACCG GCGCGCTGCG CGAGCACGGG ATCGACGCCA CGGCGAGCCG CTATTTCGCG
CACGCGCCGC GCTTCATGCC CGGCACGGCT TCCGTGCGGT TGACGGTCAA CGGCAAGCGC
GCCGGCCGCG CCGATGCGCG ATTCGACGAC AACGGCAACC TGTGCGCGAC GCCCGGCCTG
CTGCGCGCGG CCGGCCTCGT CGTGCCCGAC GCGCTCCGGG ATGCGACTGC GGCGACCGCA
CGGAGCGCCG GCGCCGACAC GCCGCCATGC TACGACTACC GGCGCGCCTA TCCGCAGACG
ATCGTCACGC TGCGCCCGGC CGACGGCGCC GTCGACCTGG TCGTGCCGCC CGACGCACTC
GACACGGGCC GGCGCACGCC CGACATGTTC GAGCACGGCG GCTTCGCCGG GCTCGTCAAC
TACGACCTGC TCGCGATGAC GACGCGCAAT CCGGCCGGCA CGTCGCAATA CTGGCAAGCC
ACGACCGAAG CCGGCTTCAA CGCGGCGGAC TGGATCGTGC GCAGCAGCCA GATCGCCACG
GTCGTGGATG GCCATGCCGG CATCGATCAT CAGGCAGCCT ACGCCCAGCG CACGTTCGCC
TCGCGCGGCG CGACGCTGCA GGCCGGGCAG ATCGTCCCGC GCTCGACGCT GTTCGCGATC
GGCCGGACGT TCGGTGTGCA GATGTTTCCG GACGAAGCAC TCGCCGTCAC GCCCGGCGCG
GCCGCACGCG TGACCGGGAT CGCACGCACG CAGGCGCGCG TCGAGGTACG CCAGCTCGGC
GTACTGATCC ATGCGTCGCA GTTGCCGCCG GGGCCGTTCA CGCTGACCGA CCTGCCGCTC
GTCAGCGGCA GCGCGGATCT CGACGTGACC GTCGTCGAGG CCACCGGCGA CGTGCAGCAT
TTCATCGTGC CGGGTTCTTC GCTGCCCGGG GCCGGGCTCG CCGCCGCGCA AGGGCTGGCG
ATCGCGGTGG GCCGCCTGCA GAACGACGGC TACGCACAAG CGCCGTGGCT CGCGACCGCC
ACGCGCGGCT GGCAGATCCG GCAACGCGCG CGGCTCAACG CCGGCATCCT CGTGTCATCG
CCGTTGCAGT CGGGCGCCGC GAGCGTCGAA TTCGCACCGC TTGCCGGCGT CGCCGCGGCC
GTCGGCGTCG ATCTCACCCG CGCCGCCGGC CGCAACGGCG CGCAGACGCG TATCGCGCTG
TCGAGCAACG GCGACACGCC ATTGCGCGCC AATGTGTCGT TCGTCCGGCG CACGTCCGGA
TACCGTGAAC TGACCGATGC GGTGCGGTCG ACCGACGCAT TCACGCCGCC GGCGCGCACC
CAGTTCGCGG CGGCGCTCGG CTGGCACGAT CGCACGCTCG GCATGCTGTC GTTCGACTAC
ACGCGCGTCG CGGTATTCGA CGGCCCCGCG ATGCAGCGCA TCGCCGGCGC ATGGACTCGC
CCGCTCGGGC GGGGCTCGCT CGCATTGAAC GTGAGCCGGA CGTTCGGCAC CCGCGGCGCC
ATCGGCACCC AGGTTTATCT GAGCGCGACC GTGCCGATCG GCACGCGCAG CGTCAGCGCG
TTTGCGAACG TCACCGGCGA CTCGGTGCGT TCGGGCGCCC GCTATTCCGA CACGTTCGGC
CGGACCGGCA GTTACAGCGT CGCGGCCGAC TACGACACCG CGATCCGGTC GCCGTCGATC
CGCGCGACGG TCAGCGCCAC GCCGAAGCAT GTGCGCGCGA TCGTCAACGC GGGCCTCTAC
GGCGCCGATC GCGCGACGCT CGGTGTCAAT CTGCGCGGTG CGGTCGCGCT GCTCGATGGT
GTAGGCATGC TGTCGCCGTA CGAGATCCGC GACACGCTCG CACTCGCCCG CGTCGGCGAT
CGCGCCGGCA TCGAACTCGT CACGCCGTCG GGCCCGGTCT GGACCGATCG CCACGGCCGC
GCCGTCATCG CATCGCTGCC CGCGTACACG CAAACGCTCG TGCGGATCAA CACGAAAAGC
CTGCCGCGCA ATCTCGACCT GAAGAACGGC ATACAGACCG TCGAAGCCGG CCGCGGCTCG
GTCAGCCGCG TCGAATTCGC CGTCGAGCAG ACGCGACGCG TGCTGCTGAC CGTGACGCTC
TCGAACGGCG CGCCGCTGCC GGTGCTGTCG ACCGTCGTCG ACGACGACGA CCGGTTCGTG
ACCGTCAGCG GAAGCGAAGG CAGGTTGCTG CTCACGGGCG CGCAACTGAC GACGCCGCTG
CGGGTCGCGT TGCCGGACGG CGCGTACTGT CGCCTGGCGA TCGCGCTGCC GGCCACGCCG
CCCGCGACGA CGCGCTATTA CGAGCGGGCC GACGCGCGCT GCGAGTCGGT GCCCGCGTCC
GTCGCGCAAG CCGCACAAAA AAAGAGCGGC ATGCCGACTG ACATGCCGCC AACCCCAACT
CTGTTCTTGT CCGAACGCGC CTAG
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| Protein sequence | MSGAIRGPRG LFALGLSAVA SCMPCAAATN PGNTAPDTVE FDTGALREHG IDATASRYFA
HAPRFMPGTA SVRLTVNGKR AGRADARFDD NGNLCATPGL LRAAGLVVPD ALRDATAATA
RSAGADTPPC YDYRRAYPQT IVTLRPADGA VDLVVPPDAL DTGRRTPDMF EHGGFAGLVN
YDLLAMTTRN PAGTSQYWQA TTEAGFNAAD WIVRSSQIAT VVDGHAGIDH QAAYAQRTFA
SRGATLQAGQ IVPRSTLFAI GRTFGVQMFP DEALAVTPGA AARVTGIART QARVEVRQLG
VLIHASQLPP GPFTLTDLPL VSGSADLDVT VVEATGDVQH FIVPGSSLPG AGLAAAQGLA
IAVGRLQNDG YAQAPWLATA TRGWQIRQRA RLNAGILVSS PLQSGAASVE FAPLAGVAAA
VGVDLTRAAG RNGAQTRIAL SSNGDTPLRA NVSFVRRTSG YRELTDAVRS TDAFTPPART
QFAAALGWHD RTLGMLSFDY TRVAVFDGPA MQRIAGAWTR PLGRGSLALN VSRTFGTRGA
IGTQVYLSAT VPIGTRSVSA FANVTGDSVR SGARYSDTFG RTGSYSVAAD YDTAIRSPSI
RATVSATPKH VRAIVNAGLY GADRATLGVN LRGAVALLDG VGMLSPYEIR DTLALARVGD
RAGIELVTPS GPVWTDRHGR AVIASLPAYT QTLVRINTKS LPRNLDLKNG IQTVEAGRGS
VSRVEFAVEQ TRRVLLTVTL SNGAPLPVLS TVVDDDDRFV TVSGSEGRLL LTGAQLTTPL
RVALPDGAYC RLAIALPATP PATTRYYERA DARCESVPAS VAQAAQKKSG MPTDMPPTPT
LFLSERA
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