| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1514 |
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| Symbol | |
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| ID | 4311774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1661576 |
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| End bp | 1663495 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638149330 |
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| Product | rhomboid family protein |
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| Protein accession | YP_773406 |
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| Protein GI | 115351567 |
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| COG category | [R] General function prediction only
[S] Function unknown |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain
[TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGAAC AACATTCTTC CAGGCCGTGG TTGACCATTC TGCTGGCCGT CGTCAATACC
GTGATATTCG TGCTGATGTG GCGACAGGCG TCGTACGGTT CGCTGTCCAA CCCGCTGCTG
CTCGACTGGG GCGCGAACTT CGCGCCGTAC ACGCTCACCG GGCAGCCGTG GCGGCTGCTG
ACCAGCGCGT TCCTGCACGG CAGCTGGGTC CATCTCGCGC TGAACATGTA CATGCTGGTG
GTGCTCGGCA CCGTGCTCGA ACGCGCGGGC GGCACGCTGC GGTTCGGCGT CGCGTATCTT
TTGTCCGCGC TCGGCGGCTC GCTGCTGAGC GCGCTCTGGC ATGGCTATCA CGAAGTCGGC
AGCACCACCT TTGCGTTCGG CGTCGCGCTG GCGTCCAGCG GGATCCGGCC GGTCGTGAGT
GTCGGTGCGT CGGGCGCACT GATGGGACTG GCGGGCGCGG CCGCGGCATT CGCGCTGCAA
CGCCGACGCG ACAGCGCAGG CGATGCGCCG GTTGCCATCA ACCTCGGCGC GCTCGGGCAA
GTGATCGCGA TCAACCTGGG CTCGGGCTTC CTCATCTCCG GCATCGATCA GGCCGCGCAT
CTCGGCGGTG TGGTCGTCGG CTTCATCGCC GGTTGGCTGA TGTACGGGGC CGGCCGCTCG
ATGCGCGTCG CCGTGCCGCT CGTGTTCGCG GTGCTCGGCA GCGCGGCGAT GTTGTTCGCC
GCGCAGCGGG CCGGCAGCGA GGAACTGCAA GGCTGGCGTG ACGCGACCCG CCGCGACGTC
GAGCGCGACG CCGCGAAGCG CCACGCGCAA CAGCAGGCGG CCGCGATTGC CGAGCAGATC
CGCGACGACG AGCAACACCG TCCGGCGCCC GTGTCGGCCG AGCAGGCGGC AGGCACCGTC
GTACCCGTCG GCAAGTGGCC ATACGCGATG GTGCTGGGCG CATCGGGCAA ACGCCTGTAC
GTGACCGACA ACGACCGGAA CACGCTCGTC GTCGTCGACG TCGAGCGGCA CGAGGTCGTG
CGCACGATCA CAGGCGAGCC GTTCGCGACG GGGCTCGACG GCTGCCCGGG GAACATGTGC
CGCGGCCGCG GCGCGAGCGG CGTGTACGTG AGCCCCGACG AGCGCTACGC GTATGTTGCG
TCGATGCGCG AGAACGGCCT CGCGCGCATC GACCTGAACA GCGGTGCGAT CGTCGATGGC
GTGACGCTCG GACGCTTTCC GCGCGCAATC GTTGCGTCCG CATCCAACGA TAGGCTGTAC
GTGCTGAACA GCGTCGACGA CACGATTTCG GTCGTCAGTC TCGCGCACTG GCCGCAGGTC
ATCGCGACGC TGCGGCTCGG CGATCACGAT GCATCGGGCG TCGAGTTCGG CCGTGCGCTG
TCGATGTGGC TGTCGCCCGA CGACCGGCGG CTGTATGCAT ACGCGATGCA GAAGGGCGCG
ATCGTCGCGT TCGATACGGC GACGAACGCG CAGGTAGAGA CCTATCCGGT CGATGCGGAT
TTCATCCAGG CTCAGCCTGG CGAGAAGGGC GCGGGCATCT GGGTCTACAA CAAGTCGTCG
GTTCAGTGGC GGGATGCGTC GAGCCTTGCC GTACGCGACA GTTATCCGGT CTGCCAGGAG
TCGATGCACA GCTTCGACGG CAGCGGTGAC GGCTCGCTGA TCGCCGTGAC CGGCTATGAC
GACAAGCCGA TGCGCGTGAT CAAGACCGCC ACGCGTCGTA CCGTCGGCGA GTTTCCGGTC
GCGGGCGGCG TGTCGCAGGT GATCTTCGCG CCGGATCACA AGACGCTGTT CGCGCTCGGC
GCAGCCGGCA CGCTGTCGTT CCTGCGCATG GACCGTTCGC TCGATTACCT GCAGGACGGC
GGTGACGGCG AGTTCCTGTG CGCGGCGTCC GTGGCCGCCA CCGACGACGA TAGCGAATGA
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| Protein sequence | MREQHSSRPW LTILLAVVNT VIFVLMWRQA SYGSLSNPLL LDWGANFAPY TLTGQPWRLL
TSAFLHGSWV HLALNMYMLV VLGTVLERAG GTLRFGVAYL LSALGGSLLS ALWHGYHEVG
STTFAFGVAL ASSGIRPVVS VGASGALMGL AGAAAAFALQ RRRDSAGDAP VAINLGALGQ
VIAINLGSGF LISGIDQAAH LGGVVVGFIA GWLMYGAGRS MRVAVPLVFA VLGSAAMLFA
AQRAGSEELQ GWRDATRRDV ERDAAKRHAQ QQAAAIAEQI RDDEQHRPAP VSAEQAAGTV
VPVGKWPYAM VLGASGKRLY VTDNDRNTLV VVDVERHEVV RTITGEPFAT GLDGCPGNMC
RGRGASGVYV SPDERYAYVA SMRENGLARI DLNSGAIVDG VTLGRFPRAI VASASNDRLY
VLNSVDDTIS VVSLAHWPQV IATLRLGDHD ASGVEFGRAL SMWLSPDDRR LYAYAMQKGA
IVAFDTATNA QVETYPVDAD FIQAQPGEKG AGIWVYNKSS VQWRDASSLA VRDSYPVCQE
SMHSFDGSGD GSLIAVTGYD DKPMRVIKTA TRRTVGEFPV AGGVSQVIFA PDHKTLFALG
AAGTLSFLRM DRSLDYLQDG GDGEFLCAAS VAATDDDSE
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