| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1386 |
|---|
| Symbol | |
|---|
| ID | 4309610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 1524116 |
|---|
| End bp | 1525339 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638149197 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_773278 |
|---|
| Protein GI | 115351439 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACC CTCAACAAAA CGCCGCCAGC GCACAGCCGC AGAACAACGG GAAGCGCAAA
CGGATGATGA CGCTGCTGAT CGCGGTCATC GTGATCGCGG CCATCGCGTA CGGCCTGTAC
TACTTCCTCG TCGCGCGCTT CCATGAAGAG ACCGACGACG CGTACGTAAA CGGCAACGTC
GTGCAGATCA CGCCGCAGAT CACGGGTACC GTGATCGCCG TGAAGGCCGA CGATACGCAG
ACGGTCAAGG CCGGCGACCC GCTCGTCGTG CTCGACCCGG CCGACTCGCA GGTCGCACTG
CAGCAGGCCG AGGCCAATCT CGCGCAGACG GTGCGCCAGG TGCGCGGCCT GTTCGTCAAC
GACGATCAAT ACCGTGCGCA AGTCGCGCTG CGCCAGTCCG ACCTGTCGAA GGCGCAGGAC
GACCTGCGCC GCCGCGTGGC CGTCGCGCAG ACGGGCGCCG TGTCGCAGGA AGAAATCTCC
CACGCACGCG ACGCGGTGCG CGCCGCCCAG GCGTCGGTCG ACGCGGCGCA ACAGCAGCTC
GCATCGAACC GCGCGCTGAC CGCGAACACG ACGATCGCGT CGCACCCGAA CGTGATGGCT
GCCGCGGCGA AGGTGCGCGA CGCCTACCTC GCGAACGCGC GTAACGTGCT GCCCGCGCCG
GTCACCGGCT ATGTCGCGAA GCGCTCGGTG CAGGTCGGCC AGCGCGTGTC GCCGGGCAAC
CCGCTGATGT CGGTCGTGCC GCTGAATGCG GTGTGGGTCG ACGCGAACTT CAAGGAAGTC
CAGCTCAAGC ACATGCGCAT CGGCCAGCCG GTCGAGCTGA CGGCCGACAT CTACGGCTCG
TCGGCGGTCT ACCACGGCAA GGTCGTCGGC TTCTCGGCCG GGACGGGCTC GGCGTTCTCG
CTGCTGCCGG CGCAGAACGC GACGGGCAAC TGGATTAAGG TCGTGCAGCG CCTGCCGGTG
CGTATCGAGA TCGATCCGAA GGAGCTCGAG AAGCACCCGC TGCGCATCGG CCTGTCGATG
CAGGTCGACG TCAACATCAA GGACGAGCGC GGCGACCAGC TCGCCAACGC GCAGAACACC
GTCTACGAGA CCAACGTGTT CGCGAAGTAC GGCGATGAAG CCGACGCCGA GATCGCACGC
ATCATCGCCG AAAACGCGGG CGGCAACGCA GCGGCACCGG CCGCGGCTGC AGCGAAATCG
AGCGGCACCG CCAAGATGAT GTAA
|
|---|
| Protein sequence | MSDPQQNAAS AQPQNNGKRK RMMTLLIAVI VIAAIAYGLY YFLVARFHEE TDDAYVNGNV
VQITPQITGT VIAVKADDTQ TVKAGDPLVV LDPADSQVAL QQAEANLAQT VRQVRGLFVN
DDQYRAQVAL RQSDLSKAQD DLRRRVAVAQ TGAVSQEEIS HARDAVRAAQ ASVDAAQQQL
ASNRALTANT TIASHPNVMA AAAKVRDAYL ANARNVLPAP VTGYVAKRSV QVGQRVSPGN
PLMSVVPLNA VWVDANFKEV QLKHMRIGQP VELTADIYGS SAVYHGKVVG FSAGTGSAFS
LLPAQNATGN WIKVVQRLPV RIEIDPKELE KHPLRIGLSM QVDVNIKDER GDQLANAQNT
VYETNVFAKY GDEADAEIAR IIAENAGGNA AAPAAAAAKS SGTAKMM
|
|---|
| |