Gene Bamb_1025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1025 
Symbol 
ID4309217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand- 
Start bp1115272 
End bp1115931 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content70% 
IMG OID638148833 
ProductXRE family transcriptional regulator 
Protein accessionYP_772918 
Protein GI115351079 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.976587 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGAAT CTACCCGCCC GCCCGTCGAC GACACCGGCA TCAACGAACG CATCGCCCGG 
CGCGTGCGCG ACTTGCGCAC GCTACGAGGC TACACGCTCG ATGCGCTCGC CGCGCGTTCG 
GGCGTCAGCC GCTCGATGAT CTCGCTCATC GAGCGCGCGT CGGCAAGCCC GACGGCCGTC 
GTGCTCGACA AGCTCGCGGC GGGTCTCGGC GTGTCGCTGG CCGGGCTGTT CGGCGGCGAG 
CGCGACGACG CGCCCGCGCA GCCGCTCGTG CGGCGCGCGC AGCAGGCGGA ATGGCGCGAT 
CCGGCGTCCG GTTACGTGCG GCGCAATCTG TCGCCGCCCG GCTGGCCGTC GCCGATCCAG 
CTCGTCGAGG TCGATTTCCC GCCCGGCGCG CGCGTCGCGT ACGACTCCGG CGGGCGCGAA 
AGCGCACTAC ATCAACAGGT GTGGGTCGTC GATGGGCGCG TCGACGTCAC GCTGGGCGAC 
CAGCTTCACG AACTTCACGC CGGCGACTGT CTGGCCATGC GTCTCGATCA GCAGCTGATT 
TTCAGCAACC CGTCGTCGCA GGCCGCGCGC TATGTCGTCG CGATCTGCGA TGTTCCCGCC 
GCCGCCGGCG CGCGGAGTGT GTCATCCGTT CAAAGCCGTC AGGCGCAGGA GCCCGTATGA
 
Protein sequence
MQESTRPPVD DTGINERIAR RVRDLRTLRG YTLDALAARS GVSRSMISLI ERASASPTAV 
VLDKLAAGLG VSLAGLFGGE RDDAPAQPLV RRAQQAEWRD PASGYVRRNL SPPGWPSPIQ 
LVEVDFPPGA RVAYDSGGRE SALHQQVWVV DGRVDVTLGD QLHELHAGDC LAMRLDQQLI 
FSNPSSQAAR YVVAICDVPA AAGARSVSSV QSRQAQEPV