| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1021 |
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| Symbol | |
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| ID | 4309213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1111581 |
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| End bp | 1113059 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638148829 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_772914 |
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| Protein GI | 115351075 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0128107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATCGTC GTACGGCGGC CCCCTACGTC ATCGTGGCGG TTGGCATCGT GATCGCGTGC
GCACTGATGG GCCTGTGCGT GCTGCAGCTA TTTCAGAGCC GGAACGACGC ACTGGAGCGC
GCAAGCGAAA CCTCGCGCAA TCTCGGCCTG ATGGCTGAGC GCGACATCGA GCGCAACTTC
GAGCTCTACG ACCTGTCGTT GCAGGCGGTA ATCCATGGTC TGCAACGGCC CGATGTGATG
TCGGCAGCGC CGGCGCTGCG GCGCGGCGTG CTGTTCGATC ATGCGATGAG TGCCCCCTTC
ATCGGTTCGC AACTGGTACT CGACGCGAAC GGCGATATCG TGCTGGATTC GTCCAACGAC
GTGCCCCGCA AGGGCAATTT CGCCGATCGC AAATACTTCA CCGTGCATCG CGACAATCCC
GACGTTGGGC TCTATGTGAG CGATCCGTTC GTGTCGCGCC TGCGCGCTGG CATGCTCTGC
ATTGTGCTGT CTCGGCGCAT CTCGAACCCG GACGGATCGT TCGGCGGCGT CGCGCTGATT
GCGATCAATC TCGAGTACTT CCACCACCTG TTTGCGGGCC TGTCGCTGGG GCAGCACGGT
TCGATGTCGC TGATCGGCAA GGACGGCATC ATGGTGATGC GTCAACCGTA CAACGTCAGC
ATCGTCGGTC GCGATATCAG CAAGGCTACG ACCTTTCGAC GGTTTCAGCG TGCGTCGGAG
GGCGTATTCT CGGAAACGGC TTCAATCGAC GGTGTACGTC GCCTCTACTA TTTCAAACAC
CTGCCGAAGT TGCCGCTGAT CATCATGGTT GCAGAGGGCG AGCAGGACGT TTATGCCGCG
TGGCGGCACC GCGCAGTGAC GATCGGCGCA CTGGTGGCGA CGTTCGGCGT CGCGTTCATC
GCGCTGTCTT TCCTGCTCAG CGGGCAACTG CGCCGCCGGA TGCGGGCCGA GTCGGAGCTG
GTGCTGCTGG CGCGTACCGA CGGGCTCACC GGCCTGAACA ATCGACGCAG TTTCGGGGAG
GTGCTGGACC GGGAATGGCG TCGCGCGAGG CGCACGCATT CCGTCTTCTC GCTGCTGTTC
GTCGACGTCG ATCGCTTCAA GGCTTACAAC GACACCTACG GGCATCAGGC CGGGGACGAC
GCGCTGGCGG CGGTCGCCCG TTGCATCGGC GAAAACATCC GCCGGCCGGT CGATACCGCG
GCGCGCTACG GCGGGGAGGA ATTCGTCGTG CTGCTTCCCG ATACGCCGCC GGCCGGCGCC
GCACAGATCG CCGAGCGGAT TCGCGCGGCA ATCGACGAAC TGGCACTCGA ACATGCCGGC
AGCGAGTATG GGCGCGTCAC GGCCAGTATT GGCCTCGCCA GCTGGACGCC GGAGCAGGAC
AATGAGCCCG ACGCGGTAAT CAAGGCGGCC GACGAGGCGC TGTACTATGC GAAAACGATC
GGCCGGAACA GGGTTGCCGC GTTGCAGCCG TTGGACTGA
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| Protein sequence | MHRRTAAPYV IVAVGIVIAC ALMGLCVLQL FQSRNDALER ASETSRNLGL MAERDIERNF
ELYDLSLQAV IHGLQRPDVM SAAPALRRGV LFDHAMSAPF IGSQLVLDAN GDIVLDSSND
VPRKGNFADR KYFTVHRDNP DVGLYVSDPF VSRLRAGMLC IVLSRRISNP DGSFGGVALI
AINLEYFHHL FAGLSLGQHG SMSLIGKDGI MVMRQPYNVS IVGRDISKAT TFRRFQRASE
GVFSETASID GVRRLYYFKH LPKLPLIIMV AEGEQDVYAA WRHRAVTIGA LVATFGVAFI
ALSFLLSGQL RRRMRAESEL VLLARTDGLT GLNNRRSFGE VLDREWRRAR RTHSVFSLLF
VDVDRFKAYN DTYGHQAGDD ALAAVARCIG ENIRRPVDTA ARYGGEEFVV LLPDTPPAGA
AQIAERIRAA IDELALEHAG SEYGRVTASI GLASWTPEQD NEPDAVIKAA DEALYYAKTI
GRNRVAALQP LD
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