Gene Bamb_0892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0892 
Symbol 
ID4308822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp980194 
End bp982104 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content71% 
IMG OID638148694 
ProductTPR repeat-containing protein 
Protein accessionYP_772785 
Protein GI115350946 
COG category[R] General function prediction only 
COG ID[COG0457] FOG: TPR repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.647896 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGACCG GCCAATCTGG GGCGCCCGCG CGCAGTGTGG GAAAATACGC GCTTTCCGCC 
AGTTTTCGCG TCATGGATTC CGCATTCGAC CGAGCGTACG CCGCGCACCG CGCGGGCCGC
CTCGCCGAGG CCGAGCACGG CTATCGTGCC GCGCTCGGCA CCAATCCCGC CGACGCCGAC
GCGCTGCATC TGTTCGGTGT GCTGCGGCAT CAGCAGGGCC AGCATGCGGA GGCAGCCGAT
CTCGTCGGGC GTGCGGTCGA ATTGCGCCCG GGCGACGCCG CGCTGCAGCT CAATCTCGGC
AACGCGCTGA AGGCGCTTGG CCGGCTCGAC GAAGCGATCG AGCGGTTTCG CAACGCGCTG
ACGCTCGCGC CCGAATTCCC GCTCGCGCAC TACAACCTCG GTAACGCGTA CGCGGCGCTG
CAGCGCCACG AAGATGCCGT CGACGCGTTC GGCCGCGCAC TTCGGCTCAC GCCCGACGAC
GCATCGATCC ACAACAATCT CGGCAACGCG CTGAACGCGC TCGGCCGTCA CGACGATGCG
CTCGCCGCGT TCCATCGCGC ACTCGAGCTG CGGCCTGGAC ATGCCGGCGC GCACAACAAT
CTCGCGATGG CGCTAAACGC GATGGGCCGG GCCGACGACG CGATCGCGCA CTTCCAGGCG
GCGATCGCCG CGCAGCCGCG CTTCGTCGCC GCGCACTTCA ATCTCGGCAA CACGTTCGAG
GCGCTCGGCC GTCACGGCGA AGCCGCTGCG GCGTTCGAAG CCGCACTCGC GCTGCACCCG
CCGTTCCCGC TCGCCCTGTT CGGGCTCGCG AACGCGCTGT GCGCGCTCGG GCGCCAGCGC
GAAGCGCTGC CCTACTACGA ACGCGCGGTC GGCCTCGATC CGTCGTTCAG TCTCGCGTGG
CTGAACCTCG GCAATGCGCA TCACGCACTC GGCGCGCACG AAATGGCGCT GCGCGCGTTC
GACCAGGCGC TGCGCGTCGC GCCCGACCTG AAGCTCGCAC AACTGCACCG CGCGGTCACG
CTGCTGACGC TGGGCGACTT CACGCGCGGC CTGCCCGCGT ACGAAACGCG TCACGACACG
CCGGGCGCGA CACCGCGCGG CACGCTGCCG CGCTGGCAAG GCGAGCCGAT TGCGTCGCGC
ACGCTGCTGA TCCGCGCGGA ACAGGGCTTC GGCGACACGC TGCAGTTCGT CCGCTTCGTG
CCGCTGGCCC GCGCGCGCTG CGCACGCGTC GTGCTCGAAG TGCAGCCGGA ACTCGTCGCG
CTACTCGCGC CGGCGGCGAC GCGCTGGCGC GTGACGCTTG TCGCCCAGGG CGCGGCGAAG
CCGCCGGCCG CGGACATCGC ATGCACGCTG ATGAGCCTGC CTTTCCTGCT CGGTCTGCAG
CCGTCCGACA TCGTCGCGGG CAAGCGTTAC CTCGACGCGC CGGACAGCGC GCGCCGGCGC
TTTCGCGGCT CGCTCGGCGG CCAGTCGAAG CGCAAGTTCG GCCTCGCGTG GTCGGGGCGC
CGCCAGGCAC AGGAAAACCG CTCGATGCCG TTCGACGCGC TCGCACCGCT GCTCGCGCTG
CCGGACATCG ACTGGGTCGT GCTGCAGCCC GCGCTCGACG AAGACGAACG GGCGCGCGTC
GACGCGCATC CGCGCGTGCA TCACCTCGAC GGGGGGCTGA ACGACTTCGC CGACACGGCC
GCGCTGATCG AACGGCTCGA CGGCGTCGTC ACGATCGATA CGGCCGTCGC GCATCTGGCG
GGCGCGCTCG GCAAGCCGCT GTGGATCATG CTGCCGTTCG CGCCCGACTG GCGCTGGTTC
ACCGGCGACG ACTGTCCGTG GTATCCGCAC GCCAGGCTGG CCCGCCAGTC CGCACCGGGA
CAATGGCTCG ACGTGGCGGC GACGGTCGCC GACGCGCTGC GCGCCGCGTG A
 
Protein sequence
MPTGQSGAPA RSVGKYALSA SFRVMDSAFD RAYAAHRAGR LAEAEHGYRA ALGTNPADAD 
ALHLFGVLRH QQGQHAEAAD LVGRAVELRP GDAALQLNLG NALKALGRLD EAIERFRNAL
TLAPEFPLAH YNLGNAYAAL QRHEDAVDAF GRALRLTPDD ASIHNNLGNA LNALGRHDDA
LAAFHRALEL RPGHAGAHNN LAMALNAMGR ADDAIAHFQA AIAAQPRFVA AHFNLGNTFE
ALGRHGEAAA AFEAALALHP PFPLALFGLA NALCALGRQR EALPYYERAV GLDPSFSLAW
LNLGNAHHAL GAHEMALRAF DQALRVAPDL KLAQLHRAVT LLTLGDFTRG LPAYETRHDT
PGATPRGTLP RWQGEPIASR TLLIRAEQGF GDTLQFVRFV PLARARCARV VLEVQPELVA
LLAPAATRWR VTLVAQGAAK PPAADIACTL MSLPFLLGLQ PSDIVAGKRY LDAPDSARRR
FRGSLGGQSK RKFGLAWSGR RQAQENRSMP FDALAPLLAL PDIDWVVLQP ALDEDERARV
DAHPRVHHLD GGLNDFADTA ALIERLDGVV TIDTAVAHLA GALGKPLWIM LPFAPDWRWF
TGDDCPWYPH ARLARQSAPG QWLDVAATVA DALRAA