| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0876 |
|---|
| Symbol | |
|---|
| ID | 4310881 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 960959 |
|---|
| End bp | 961768 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638148677 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_772769 |
|---|
| Protein GI | 115350930 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.118506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACCT GGCGTCTCGA GCGACCGAAC CTCAGCGGGC AACTGGACGT GTCCCGCGCG
ACCGGTCTCG TCGCCGCGAT CGGCGGCAGC GAGCCGAACG CGTTCGCCGC GGAAATCCTG
AAGCTGTTCG ACGATGCGCT GTCCGTCACG CAGTGCACGA TCTTCGCGTA CGAGTTCGGC
AACCGGCCGC GCACCGTGTC GGTCGCCGAT CATCGCGGCC GCCGCTACCT GCGCGATGTC
GCCGACACCT ACGCGCGACA TTTCTATGCG CTCGACGGCA ACCAGACGAT CGTCTCGGCC
GCCGGTCGCG GCCCGCACCG CCGCGACGTG CTGCTGCATC AGCAGGCCGG CGACGAGATC
GGTCACGACG CGTATCGCGC GGCCTGCTAC CGCGGCCCCG ACGTATCCGA TCGCCTCGCG
CTGCTGATGC AGCCGAACGA CTCGACCTGG TTGTCGATCA ACCTGTATCG CGCGCATCGC
AGCGGCGCAT TCCAGCCGCG CGAGATCGCG GCCATCGAAA CGCTCGCACC GCTGATCGCG
CAGGCGGCGC AACATCATTA CGCGCTCGCG GGCTCGACGC AGATCGGCAT CCCGCAACTG
ATGCTCGCGC GGCTGCGCGG CGCCTGTCCG GCGTTGTCCA AGCGCGAACT CGACGTGCTG
CGCGGTGTGC TCGAAGGCCT GAGCGCGCGG GAAATCGGCG ACACGATCGG CGTGAAGGCG
TCGAGCGTCG TCACCTACCA GAAGCGCGCG TACCGGCGTC TCGGCATCTC GAGCCAGCGC
CAGCTGTTTG CGCTGTGCCT GCAACCGTGA
|
|---|
| Protein sequence | MRTWRLERPN LSGQLDVSRA TGLVAAIGGS EPNAFAAEIL KLFDDALSVT QCTIFAYEFG
NRPRTVSVAD HRGRRYLRDV ADTYARHFYA LDGNQTIVSA AGRGPHRRDV LLHQQAGDEI
GHDAYRAACY RGPDVSDRLA LLMQPNDSTW LSINLYRAHR SGAFQPREIA AIETLAPLIA
QAAQHHYALA GSTQIGIPQL MLARLRGACP ALSKRELDVL RGVLEGLSAR EIGDTIGVKA
SSVVTYQKRA YRRLGISSQR QLFALCLQP
|
|---|
| |