| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0870 |
|---|
| Symbol | |
|---|
| ID | 4310875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 954151 |
|---|
| End bp | 956505 |
|---|
| Gene Length | 2355 bp |
|---|
| Protein Length | 784 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638148671 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_772763 |
|---|
| Protein GI | 115350924 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCA CCTTCGCCGC GCGGCCGTCG CGCGGTCGGC TCGCGCTCGC GTGCGCGGCC
GCTTTTGCGT GGCCTGCCGC ACAGGCGGCT GCGATCGATC GCGCATCCGC CGAGCCGGTG
CCCGGCGGCG CGGGCAACCC GGCCGGCCGT GCCGCACCGG TTGCCGCGGT CGTGCCCGCG
CCGCCGGGCG ACACGCTGAC CGAGGTCAGC GTCACCGCCC GGCGGCAACC CGTCGATCCG
GATACGCCGG CCGTCGTCGA GTCGATCACG CGCGAGCAGA TCGATGCGCA CACCAACGTC
ACGACCGAGG ACGCGCTGAA GTACGCGCCG AACCTGATGG TTCGCAAGCG CTACATCGGC
GACCGCAACA GCGTGTTCGC CGGCCGCGAC TTCAACGAAC TGCAGAGTGC GCGCGGGCTC
GTGTATGCCG ATGGCCTGCT GCTGTCGAAC CTGCTCGGCT CGAGCTATGC GTACCCGCCG
CGCTGGTCGC TGATCGCGCC CGACGATGTC GAGCGCGTCG ACGTGCTGTA TGGCCCCTTT
TCCGCGCTGT ACCCCGGCAA CGCGATCGGC TCGACCGTGC TGCTGACCAC GCGGCGGCCC
GACAAACTCG AGGCGTCGCT GTCGACGCAG TTCTTCACGC AGCGCTATCA CGACGGCTAC
GGGCTGGCGG ACAGCTTCGG CGGCAACCAC CAGACCGCGC GGATCGCGAA CCGGATCGGC
AAATTCTGGT TCTCGCTGTC GCTCGACCGG CTGGAGAACG ACGGTCAGCC GATGCAGTAT
GCAAGCCCCA ATTCCGCGTA CAACCCGAAG CTCGGCGCCG CGGTGCCCGT CACAGGCGCG
GCCACCGACA TCGGACCCAA CGGCAAGCCG CGCACGATCG TCGGCGCGCA GAACATCGAG
CGGACCGAGC AGCTCAACGA GACGGTCCGC ATGGGCTATG CGTTTACGGA CCACGTCGAC
GCGACGCTCA CGCTCGGGCA CTGGGAGAAC CATTACCGGC AGCACGGCGA AACCTTCCTG
CGCGACGCGG CCGGCAATCC CGTCTACGGC GGCAACGTAT CGATCGGCGG CCGGAACATG
ACCGTCGCGC CGAGCGCGTT CGCGCCGCAG CGCGGCGACC AGGAGAACTG GCTGTACGCG
CTCGGCCTGA ACGGCCGGCT CGATTCGGGC TGGCGGCTGT CGGGCGTGGT GTCCGCCTAC
GACGTGTCGC GCGACGTGCT GCGCGCGGCA TCGACCGCGC AGGGCGGGGC GGGCACGCTG
TTCCAGGGCG ACGGCACGGG CTGGCGCACG CTCGACCTGA AGGCCGAGGC GCCGGAAGTG
AAGGGCCACA CGTTCACGTT CGGCTATCAC TACGACAACT ATTTCCTGCG CAACGTCACG
TACAACACGG CCGACTGGCT GGCCGGGCCG ACCACCTCGC TCGCGAGCGT CTACCAGGGC
GATACGCGCA CGCAGGCGCT GTTCGCGCAG GACGCGTGGC GTTTCGCGCC CGGTTGGCTC
GCGACCCTCG GCCTGCGCTA CGAGCGCTGG GATGCATACG GCGGCGCGCT CGGCAACGCG
GGCGGCACGG TCGGTTACGC GGACCGCGGC GCGAATGCGC TGTCGCCGAA AGTCGCGCTG
CAGTGGGACG CGACGGACGT GTGGCGCTTC CGGGTGTCGT TCGCGACGGG CACGCGCTTC
CCGACGGTCG GCGAGCTGTT CCAGGGCACG ATCTCGAACA ACGCGATCGT CAACAACAAC
CCGGGCCTGC GGCCGGAAAA GGCGATCGAC TGGGACTTCA CGGCCGAGCG CGACGTGGGC
GTCGGCGTCG TGCGCGCGAG CGTGTTCCAG AGCGACCTGC GCGATTCGAT CTACAGCCAG
ACGACGGTGT CGGGCGCGTC GACCGTCACC AACATCTCGA ACGTCGATCG CGTGCGCGTG
CGCGGCGTCG AACTCGGATT CAGCGGCCGC AACGTCGGGC TGCGCGGGCT CGACATCGAC
GCGAATGTGT CGGCCAGCAA TGCGCAGATC TTGGCCGACA CCGCGAATCC CGCGTACGTC
GGCTCGCGCT TTCCGCGCAT CCCGCGCATG CGCGCGAACC TGCTCGCGTC GTACCGCTTC
GACGAGCACT GGCTCGCGAG CGTCGGCGTC CGGTACTCCG GTCGCCAGTT CAACACGCTG
GACAACAGCG ACGTGAATCC GGACGTGTAC GGCGGCACGA GCAGTTTCAC GGTCGTCGAC
CTGAAGGCGC GCTACCGGTT CGACCGTCAC TGGACCGCAT CGGTCGGCAT CGACAACCTG
ACGGACCGCC GCTACTACGT GTTCCACCCG TATCCGGGTC GCACTTTCTT TGGAGAACTG
AAATGGTCAC TGTGA
|
|---|
| Protein sequence | MSFTFAARPS RGRLALACAA AFAWPAAQAA AIDRASAEPV PGGAGNPAGR AAPVAAVVPA
PPGDTLTEVS VTARRQPVDP DTPAVVESIT REQIDAHTNV TTEDALKYAP NLMVRKRYIG
DRNSVFAGRD FNELQSARGL VYADGLLLSN LLGSSYAYPP RWSLIAPDDV ERVDVLYGPF
SALYPGNAIG STVLLTTRRP DKLEASLSTQ FFTQRYHDGY GLADSFGGNH QTARIANRIG
KFWFSLSLDR LENDGQPMQY ASPNSAYNPK LGAAVPVTGA ATDIGPNGKP RTIVGAQNIE
RTEQLNETVR MGYAFTDHVD ATLTLGHWEN HYRQHGETFL RDAAGNPVYG GNVSIGGRNM
TVAPSAFAPQ RGDQENWLYA LGLNGRLDSG WRLSGVVSAY DVSRDVLRAA STAQGGAGTL
FQGDGTGWRT LDLKAEAPEV KGHTFTFGYH YDNYFLRNVT YNTADWLAGP TTSLASVYQG
DTRTQALFAQ DAWRFAPGWL ATLGLRYERW DAYGGALGNA GGTVGYADRG ANALSPKVAL
QWDATDVWRF RVSFATGTRF PTVGELFQGT ISNNAIVNNN PGLRPEKAID WDFTAERDVG
VGVVRASVFQ SDLRDSIYSQ TTVSGASTVT NISNVDRVRV RGVELGFSGR NVGLRGLDID
ANVSASNAQI LADTANPAYV GSRFPRIPRM RANLLASYRF DEHWLASVGV RYSGRQFNTL
DNSDVNPDVY GGTSSFTVVD LKARYRFDRH WTASVGIDNL TDRRYYVFHP YPGRTFFGEL
KWSL
|
|---|
| |