Gene Bamb_0812 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0812 
Symbol 
ID4309877 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp897315 
End bp898433 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content70% 
IMG OID638148608 
Productlytic transglycosylase, catalytic 
Protein accessionYP_772705 
Protein GI115350866 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCTT GGTTATCGTG GCGTCCCAAT GAGCAGCATG CGCAGATCGT GCGCGACATG 
CTGCGTCGCG GGACGCGTGT CAGTCACCAT TTATTCAGCG TTGTCGGCTG TTTTGCCGTC
GCGATCGCAC TGGCCCTGTG GCTGCTGCCG ACCGTGCGCG GGAACATCGC CGCGAAGCTG
ATGCCGGTCG TGTCCGCGGC CGTGCAGGCC GGTCCGGCCC GTCTGCTGAC CGGTCATCCG
CTGCCGAACT TCGCGCCTGC CGGCGCGCAG CCGCAGCAGG AAGACACCCC CGAACCGGAT
GCGCTCGCCG TCGGTCTCGA CGTCGCACCG GAAACCGCCG CGCAGAACGA TGCGTCCGAT
CCGGCCCGCA ACGGCCCGTC GCCCGTCGCG CTCGCGAAAC TGATCCCGAC CCAGCGGGTT
CCGGCCGATG CGCGCGACGA TCGTGCGCTC GCGTCGAACC GTGAACAGGC GCTCGTCGCC
ACTTACCTGT CGCGCCGTTA CCGGGTCGCG CAGGAGCCGC TCGGCCAGCT CGTCAAGGCT
GCGTTCCAGA CCGGTCGCGA CGTCGGCCTC GATCCGCTGC TGCTGCTGTC CGTGATGGCG
ATCGAATCGG GCTTCAACCC GTACGCGGAA AGCGGCGTCG GCGCGCAGGG CCTGATGCAG
GTCATGTCGA AGGTCCATTC CGACAAGTTC GAATATTTCG GCGGTACCGA CACCGCGCTG
CAACCGCTCG CGAACCTGCA GGTCGGCGCG CTCGTGCTGA AGGACTGCAT CGCCCGCGGC
GGCTCGCTCG CGAACGGCCT GCGCATGTAC AACGGCTCGA CCAACCCGGA CGACACCGCC
TACGGCTCGA AGGTCATGGC CGAGCGTGCC CGCCTGCGCG ACGTCGCGCA TGGCCGCAGC
GTGCCGCTCA ATGCGCCGGC CCAGCCGTCG AAGCCGATCG TGACCGCGTC CGCGACGGCA
GCGGCCGGCG GCGCGAAGCG CGTGCACGCG ACGCTCGACG CCGCGCAGCC GATCGCCGCG
AAGGCTGCCG CCGTGCCGAA GGGCGCGCCG CAGCAGGACG CCGCCAGCGT CGACACCGCG
AAGCAGTCGC ACGGCGACCA CCCGGAACTC GGCGCGTAA
 
Protein sequence
MNAWLSWRPN EQHAQIVRDM LRRGTRVSHH LFSVVGCFAV AIALALWLLP TVRGNIAAKL 
MPVVSAAVQA GPARLLTGHP LPNFAPAGAQ PQQEDTPEPD ALAVGLDVAP ETAAQNDASD
PARNGPSPVA LAKLIPTQRV PADARDDRAL ASNREQALVA TYLSRRYRVA QEPLGQLVKA
AFQTGRDVGL DPLLLLSVMA IESGFNPYAE SGVGAQGLMQ VMSKVHSDKF EYFGGTDTAL
QPLANLQVGA LVLKDCIARG GSLANGLRMY NGSTNPDDTA YGSKVMAERA RLRDVAHGRS
VPLNAPAQPS KPIVTASATA AAGGAKRVHA TLDAAQPIAA KAAAVPKGAP QQDAASVDTA
KQSHGDHPEL GA