Gene Bamb_0685 details

Gene Information

• Locus tag: Bamb_0685
• ID: 4308562
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 764752
• End bp: 765312
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 638148480
• Product: Tfp pilus assembly protein FimT-like protein
• Protein accession: YP_772578
• Protein GI: 115350739
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4970] Tfp pilus assembly protein FimT
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACTGC ACCGGCAGGT CGTCAAAAAA GGCATGCGCA GCTGCGGCGG CTTCACGCTC 
GTCGAGCTGA TGGTCGCGAT CGCGCTGGCC GCGTCGATCG GACTTTTCGC AGCACCCGCA 
TTCAATCAAT GGCACATGCG CGAACGCGTG GATGCGCGCT CGCGCGCGCT CCTCGGTGCG 
TTGTCGTTTG CACGCACTGA GGCGACGCGT CTCGGCGTGC GCGTCACGCT GTGCCGAGCC 
GGGCGCGACG GCGACTGCAT GCGTTCCGGC GAGCGCTGCG ATCCGGCGGA ATGGTCGTGC 
GGCTGGATTG TCAGCGGGCA GTTCGACGGA CAGTCGCGCG TGCTGCGGCG TTATCCGCGC 
GATGCCGACA TTGCCGTCGC GGGCGTGGCG CACGATCTGG CGTTCGCGCC GCCGGCGGGG 
CAGGTGATCG GCGGGATCCG GCGCTTCGAA TTGCGTCCGC AGCGCATGCT GTCCGGCGAC 
GACGCACGCG TGTCGCGTTG TATCCGGATC GCGGCGGGCG GCCGGGCGCG CGTCGCCGCC 
GGGCGTTGCG AGGCGGCATG A 

 

Protein sequence

MELHRQVVKK GMRSCGGFTL VELMVAIALA ASIGLFAAPA FNQWHMRERV DARSRALLGA 
LSFARTEATR LGVRVTLCRA GRDGDCMRSG ERCDPAEWSC GWIVSGQFDG QSRVLRRYPR 
DADIAVAGVA HDLAFAPPAG QVIGGIRRFE LRPQRMLSGD DARVSRCIRI AAGGRARVAA 
GRCEAA