| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0568 |
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| Symbol | |
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| ID | 4308961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 636465 |
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| End bp | 641777 |
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| Gene Length | 5313 bp |
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| Protein Length | 1770 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638148362 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_772461 |
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| Protein GI | 115350622 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTTTC ACCGCACCGC GGTGGACACC ACTTCAAAAA AGAGAGAGGG GCTTGTCGTG
AATCACTCAT TTCGATCGAT ATGGAGCGAA GCCGCCGGCT GCTGGGTGGC GGTCGCGGAA
ACGGCCCGGG CGCGCGGCAA GCGTTCGGGC GGCGAATCGG GCGCAAGCCG CCGTGCCGGC
CGCATGGCGG CCCGTCGCTC GCCGCTGCGT GTCGCCGCGC TCGGCGCCGC GCTGGCCGCG
CTGTCGGCCG GCTCCGCGTA CGCCTCGACG TGCGGCGACG GCTCCGCGGT CGCGAGCGGC
GGCACCTGCG CGCTCGGCAG CTACAGCCCG ACCGTGAATG ACAACCTGGC CGGCGCCACG
ACCGTGTCGG GCGGCGACAC GGTCGGCGTG ACGGGTGCAT GGACGAGCGC CGGCGGCGAC
CCCGGCTATA CGCTCACGCC GATCGGCAAT ACGTCGATCG TGTCGGGCAA CCCGAACCAG
CCGCTGCTGT CGCTCGGCGG CAAGACGCAG AGCGTCAGCA CGCCCGACTC GATCACGGGT
ACCCATACGT CGATCGCCAC CTACGACTCG TCCGCGTTCG CCGCGTCGAC GGCCGGCGCG
ACCAACGTGC CCGTCTACCA GGACGTGAAC GGCAACCAGT ACGTGAACCT TCGACTCGGC
ACCGTCGACA ACACCGGCGG CACGCTGAAC GTGTCGATCG GCAATCCGGC GAACGCGCCC
GACGCGGCCG GCAACGCGAT CTCGATCGCG CCGAAGCAGA CCGACCTGAC CTTCGCGGAC
GGCACCGGCT CGGCAAAAAG CGTCGTCAAC TGGAATTCGC GCAACCAGAT CTGGCTCGGC
ACCGGCGACT ATCTCGCGAG CGGCGGCGCC GTCGGCCAGG TCCAGCTCGA CGTGCCGACC
TATGCGGGCA CCTTCACCGC GTTCGACGGC AGCACGTGGA CCGTGAGCGA CGCCGCGTCG
CTCGCCGCGT ACAACGATTT CCTCGCGCGC GCCGTGCGCA GCGGCGCGCT CGGCACGCAA
GCCGCGTACG ACACCGCGTT CGGCCAGGCC GTCACCTTCA CGCAGGAAAC CTTCCAGTAC
GCGAACAACG TGTCGGCCGG CGACAAGAAC ACGCTGCCGA TCGACCATCT GTCGGTGATG
CACGGCACGG GCGCGAACGC GACGCTGCAG ATCGGCAAGG ACGGCCAGAT CGACTTCCGC
GGCACCAACA CGATCGAATC GAGTTCGGCC GTCCTCGCGG AAAACGGCGC GCACTTCGTC
AACGACGGCC GCCTGTCCGG CGACTTCACG CTGGTGCGCC TGCTCAGCGG CGCGAGCGGC
GTCAACAACG GCGTGATCTC GGCCGGCTAC GCGTCCGGCG ACAACGTCGA CACGAGCAGC
AGCACGCCGC CCGACAACTT CGGGTTCCAC GCGTACACCG AGGGCAACGG CGTGTATGCA
AGCGGCACGG GCACGACGTT CGTGAACAAC GGCGTGATGA ACGTCGGCGC CTGGACGCTC
GACGGCAACC GCCCCGACCT GCAGAACTAC GCGGTGGCCG TGACGGGCGG CGCGAACGCG
TCGAACGCCG GCACGATCAA CGTGGGTGTC AACGCGACGA CGCTCGACAG CCAGGTGATC
GGCGGCTTCG CGGCCGGCGG CACCTTCACG AACGACGCCG GCGGCACGAT CCAGCTCGGC
CGTGCGGCCC AGTACGCACC GGGGGCAGCG GCGAACGACG TCGCGCTGTC CGCGCGCGCG
TACGGGATCC TGCTCGGCGC GTCGGGCACG GCCAGCAACC TCGGCTCGAT CGTGATCGGC
TCGCAGACGC AGAACGGCGC GGGGATGGCG AGCGTCGGCT CGTCGTCCGG CACGCTGCGC
AACGCAGGCT CGATCGTCGT GAACGGCGCG GCGCCCGGCA CGCCGCTCGC GAACGTCGGC
ATGCTCGCGG CCAACACGGC CGCGACCGTG ACCAACACGG GCACGATCAC GCTGAACGGC
GTGAACGGGA TCGGCATCAT GGTGGTCGGC ACCTCGACGG CCACGGCCGC GACGTCGACC
GGCACGATCA ACGTGGCCGG CTGGCTCGAT CCGGCATCGG ACACGCGCAA CTACGGCGTG
TGGGCAGAAG GATCGCGCGC GCAGGCCACG GTCGACGGCG CGCTCAACCT GACGGGCAAC
GGCGCGATCG GCGTCCATGC GCGCTCGGGC GCGACCATCG ACGTCGGCGC GAACGCGGTG
CCCCGCTTCA TGTCGGGCAC GAACCAGATC GGCTTCTATG CGTATGGCGC GGGCGCGAGG
ATCAACGTCG CCGCGCAGCA CCTGAGCGTC GATACCGACG ATTCGACGCT GTTCCGGATC
GCGGGCGGCG CGGCCTATAC GGGCGCGTCG GCCGCCGGCA CGCTGACGAC GGACGTGACC
GGCCAGCGTG CGCGCGGCGT GCTCGCGACC GGCGCCGGCA CGACGCTGTC GACCGGCAAC
GCCACCTACA ACGTCAACGG CGCGAACGGC ATCGCGGTGG CGGTCGAAGG TGGCGCGCAG
GGCTCGATCG ACGCCGCCGC AACGATCAAT CTGAACGCGG CCGGCGCGAT CGCCGGTGTC
GTCGACGGCC AGGCGCACGA CCTCGCCGGC GCGAATGCCG GCGCGCCGGT CACGACGACG
CTGGCCAACG CTGCCGCGGT CGCCTCGTCG AGCGCGGGCG TGACGGGTTT CGTCGCCCGT
AACCTCGGCA CGCTCGAGAA CCGCGGCTCG GTGCTGCTGA CCGGCGCCGG CTCGACGGGC
GTCGTGATCG GCGCGCTCGG CACGGTGAAC AACGCATCGG CGATCCGCGT GTCGAACGGC
ACCGGCGCGC TCGTGCAGGG CGCGTCGGCG ACGCTCGCCA ACTCGGGCAC GATCGAGGCC
GACGACGGCG TCGCGGGCGT GCACCTGACC GGCGCGGGCG CGTCGGTCGC GCTGTCCGGC
GCGGGCACGG TCATCGCCAA CGGCAGCGCC GACGGCGTGC GGGTCGATGC GAGCGTCGCG
GACGGCGGGA TCGCGGCCGG CCCGACGTCG ATCGCGGTGG GCGGCGCCGG CAAGGGCATC
GACAACCTCG GCACGAACAC GACGATCGCG CTGTCGGGCA CCCAGATCGG CACGACCGGC
AACGGCGCCG ACGGGCTCTC GTCGACGGGC GCCGGCGCGC GCATCGCGAC CGATGCGGCG
ACCGTCGTGC GCACCGCCGG CGACAACGCA CGCGGCCTCG TCGTGGCGGG CGCGGATTCG
ACGCTCGCGG CCAACGGCAC GACGGTCGCG ACGACGGGCG CCGGCGCGCA CGCGATCGTC
GCGGGCAGCG GCGCGAGCGC GTGGCTGTCG GGCGCGAAGG TTTCCACGGC GGGTGCGGCG
GCCGACGGCC TCGTCGCGCA GAACGGCGGC CGCATCGGCG ACACGGGGTC GTCGATCGCG
AGCGCGGCCG GCAGCGGCGC GAACGTCGAC AGCGGCGGCG TGCTCGCACT GACCGGCACG
ACGCTCAAGG GCGCGACCGC CGGCGTGCTG AGCACCGACA CGCTCGCGAC CGGCGCGACG
AGCGCGGTGC TGGTCGACGG CGGCAGCGTC GCGTCCGTCG CCGGGCCGGC ATTCGCCGCA
CGCGGCGGTA CGGTCGACAT CGCGGTGCGC AACGGCACCG TCGTGACGGC CGGCAACGGC
ACGCTGCTGG ACCTCGCGAA CGGCAGCACG GCGACCTTCA ACGCATCGGC GGTCAACCTG
AGCGGCGACA TCGTGTCGGA CGCGTCTAGC AACGGCAACG TGTTCCTGGC GAACGGCACG
ACGCTGACCG GCAAGATCGA CCCGGTCGCG CTGACCGTCG ACGGCACGAG CACGTGGCGC
ATGACCGGCA GCTCCGTGCT GAGCAGCCTG AACAATGCGG GCCTCGTTGC ATTCGCCGCA
CCGTCCGGCG CGCCGACGGC GGCAGGCAGC TACCGGACGC TGACCACCGG CAGCTACGTC
GGCTACGGCG GCACGATCGC GCTGAACACC TACCTCGGCG CGGATGCGTC GCCGACCGAC
CGGCTGATCG TGAACGGCGG CACCGCGAGC GGCACGACGG GGCTGAAGAT CGCGAACACG
GCCGGCACCG GCGCGCAGAC GACCGGCGAC GGAATTCCGG TGGTCGTCAC GGCCAACGGC
GGCACGACCG CCGCGTCGGC GTTCCATCTC GCGGGGCCGG TGCAGGCCGG CGCATACGAA
TACCGGCTCT ATCGCGGCGG ACAGAGCGAC GCGAACGGCT GGTACCTGCG CTCGCAACTC
GACCCGACGG ATCCTGACGA TGCGATTCAT CCGTCCGGCA ACGGGAACGG GAACGCCAAT
GGCAACGGCA ACGGCGGCAA TCTCGCGTAT CGCCCGGGCG TCGCGGGCTA TGCGATGACG
CCGCTGCTGA ACGCCGACTA CGGTTTCTCG ACGCTCGGCA AGCTGCACGA ACGCGTCGGC
GACATCTACA ACCTCGAGAA GCAGGCGCCG GGCAACCGCG ACGGCGTGTG GGGCCGCATC
GGCGGACAGA GCCTCGACGC GAACGCGGGC CGCTTCGCGG CCGACGAGCG CACGTTCTTC
GCGCAGTTCG GCAAGGACTG GACGCTCGAG CAGGCTGCGG CCGGCGGAAG CACGCACGCG
GGCGTGACGG CGAGCATCGG CGTCGCGAAC GCGAGCTTCG ACGACATCGC GCGTGCCGAT
ACGCCGGGCC TGTCGACGTC GACGGGCTCG GTCGAGATGC ACGCGCAGAG CGTCGGCGGC
TACTGGACGC GCTACTTGGC CGATGGCACC TACTTCGACA GCGTCGGCCA GGTCACGCAC
TACGGCAACC GCTATCGCGA CAGCTACGGC AACGACGCAT CGCAGAACGG CTTCGGCATC
GCGCTGTCGC AGGAAGTCGG CAAGCCGTTC GGGATCGGCG GCACGCCGAT CGCGGTCGAG
CCGCAGGCGC AGCTGATGTA CCAGTACCTG AAACTGAACG GGTTCAACGA CAACGTGTCG
GCCGTATCGG GCACGACGAC GAACGCGTTG CGCGGGCGCG TCGGCGTGCG GATCTTCCGG
CCGAACCTCG ATGCGAACGC GGGCGGCGGC GCCGCGACGC CGTACTTCAC GGCCGACGTG
CTGCACGACT TCCTGTCGCC GGGCCAGACG GTGGTCGGCG GCACGCCGTT CGCGACGCAC
CTGGGCCGCA CGTGGTACGA GCTGGGCCTG GGCGTGACCG CGGGCTTCGG CAAGTCGGGC
GAGCTGTACG CGAACGTGAA ATATGCGCGC AACCTCGGTG GCGATTACCG GCGCGGCGTC
ACCGGGCAGG TCGGTTACCG CTACAGCTGG TAA
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| Protein sequence | MRFHRTAVDT TSKKREGLVV NHSFRSIWSE AAGCWVAVAE TARARGKRSG GESGASRRAG
RMAARRSPLR VAALGAALAA LSAGSAYAST CGDGSAVASG GTCALGSYSP TVNDNLAGAT
TVSGGDTVGV TGAWTSAGGD PGYTLTPIGN TSIVSGNPNQ PLLSLGGKTQ SVSTPDSITG
THTSIATYDS SAFAASTAGA TNVPVYQDVN GNQYVNLRLG TVDNTGGTLN VSIGNPANAP
DAAGNAISIA PKQTDLTFAD GTGSAKSVVN WNSRNQIWLG TGDYLASGGA VGQVQLDVPT
YAGTFTAFDG STWTVSDAAS LAAYNDFLAR AVRSGALGTQ AAYDTAFGQA VTFTQETFQY
ANNVSAGDKN TLPIDHLSVM HGTGANATLQ IGKDGQIDFR GTNTIESSSA VLAENGAHFV
NDGRLSGDFT LVRLLSGASG VNNGVISAGY ASGDNVDTSS STPPDNFGFH AYTEGNGVYA
SGTGTTFVNN GVMNVGAWTL DGNRPDLQNY AVAVTGGANA SNAGTINVGV NATTLDSQVI
GGFAAGGTFT NDAGGTIQLG RAAQYAPGAA ANDVALSARA YGILLGASGT ASNLGSIVIG
SQTQNGAGMA SVGSSSGTLR NAGSIVVNGA APGTPLANVG MLAANTAATV TNTGTITLNG
VNGIGIMVVG TSTATAATST GTINVAGWLD PASDTRNYGV WAEGSRAQAT VDGALNLTGN
GAIGVHARSG ATIDVGANAV PRFMSGTNQI GFYAYGAGAR INVAAQHLSV DTDDSTLFRI
AGGAAYTGAS AAGTLTTDVT GQRARGVLAT GAGTTLSTGN ATYNVNGANG IAVAVEGGAQ
GSIDAAATIN LNAAGAIAGV VDGQAHDLAG ANAGAPVTTT LANAAAVASS SAGVTGFVAR
NLGTLENRGS VLLTGAGSTG VVIGALGTVN NASAIRVSNG TGALVQGASA TLANSGTIEA
DDGVAGVHLT GAGASVALSG AGTVIANGSA DGVRVDASVA DGGIAAGPTS IAVGGAGKGI
DNLGTNTTIA LSGTQIGTTG NGADGLSSTG AGARIATDAA TVVRTAGDNA RGLVVAGADS
TLAANGTTVA TTGAGAHAIV AGSGASAWLS GAKVSTAGAA ADGLVAQNGG RIGDTGSSIA
SAAGSGANVD SGGVLALTGT TLKGATAGVL STDTLATGAT SAVLVDGGSV ASVAGPAFAA
RGGTVDIAVR NGTVVTAGNG TLLDLANGST ATFNASAVNL SGDIVSDASS NGNVFLANGT
TLTGKIDPVA LTVDGTSTWR MTGSSVLSSL NNAGLVAFAA PSGAPTAAGS YRTLTTGSYV
GYGGTIALNT YLGADASPTD RLIVNGGTAS GTTGLKIANT AGTGAQTTGD GIPVVVTANG
GTTAASAFHL AGPVQAGAYE YRLYRGGQSD ANGWYLRSQL DPTDPDDAIH PSGNGNGNAN
GNGNGGNLAY RPGVAGYAMT PLLNADYGFS TLGKLHERVG DIYNLEKQAP GNRDGVWGRI
GGQSLDANAG RFAADERTFF AQFGKDWTLE QAAAGGSTHA GVTASIGVAN ASFDDIARAD
TPGLSTSTGS VEMHAQSVGG YWTRYLADGT YFDSVGQVTH YGNRYRDSYG NDASQNGFGI
ALSQEVGKPF GIGGTPIAVE PQAQLMYQYL KLNGFNDNVS AVSGTTTNAL RGRVGVRIFR
PNLDANAGGG AATPYFTADV LHDFLSPGQT VVGGTPFATH LGRTWYELGL GVTAGFGKSG
ELYANVKYAR NLGGDYRRGV TGQVGYRYSW
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