| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0368 |
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| Symbol | |
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| ID | 4308807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 410539 |
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| End bp | 415101 |
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| Gene Length | 4563 bp |
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| Protein Length | 1520 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638148157 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_772262 |
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| Protein GI | 115350423 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.268176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAC AACTTCCACC GGGCGCCGAG AAGGAACAGG CCGTTACCTG GCTCAGCGAT
GTTTCCCCCA AGGATGTCGC CGCGGGCGGC AACCGCTTCG ATGCGTGGTT GCGACGGATC
AGCGGCAACC ACATCACGTT CGAGGACGTG AAGACCTTTG CTGGCGCGGT GCCGATCGTC
GGCAACATCA TGGCGATGGT CGACGCGCTC GGCGATATTG CCGAGATCGT CGAGAAGCGC
GGCGGTCAGG TGCTCGACTA CATGAGCCTC GCGATCAACC TGCTCGGCAT CATTCCGATT
CCGCCGACGC TCGCGCCGTT CCGGATGTCG GCGCGCCCGC TGCTCGCGCT CGTCCGTCAC
GAATTGCTGG CGACACGCAG CAATCTCGGC GCGGCGATCA TCTCCGTGCT GGTCACGCAT
ATCAACGCGA CTTGCGCGAC CGAGATCGAG GATTTTCTCA ACAAGCTGAA GGCCGGCCTC
GTCGAGCTGC TCGACGGATG CGCATCGAAA GCCGAGGAGA TCATGCTCGC GCTGGCGACG
GGCATGGACA AGGCGCTGCA CGGGCAGCTT TTCGACGCCA ACGCCAATCT GAGGCGCCAG
CAGCAGCTCG CCAAAAAGCT GGCGGACGCC CGGCCGTGGT ACAGCCCCAG CCGCGTCGGC
GACGGCATCC AGTTCGCGTA CGAAGGCACC AAGGCGCTCG GGAAGAAGGC CGTGAACAAG
ACGGCGGGCA CCATGGCGAC GCTCGCGCCC GACGCATGGC TCGAGCCGTT TCGCGGCACG
GTGACGTTCC TGCGGACCGA GGCGCCGAAG ATCGCGACGT CGATCCGTTC GCTCGCCGGC
AGCGAAGAAG GCAAGATGAT GTGGCTGGTC GTGCAGTTGA TGGAGGCTGT CGCACGCGTC
AAGGCACGCG CGAAGCTCCA TGAGCAGAGT GCGGACGTCA AGGCGGCGGG GACGAGCCAG
GCGAAGAAGA CGCGCGGGCA GGAGGGGCTG GAGAAAACCA ACGGGCAAGC CCCATCCGAA
GGGCCGGGGA AGAGCGCGTG CAAGTCTTGT GGCGTCGGGG CATCGCCCGC ATCCATCGAT
TTCGCGTTCG GTGACGAAAC GTTCTCGCAT GTTGATTTCG ACCTGCCCGG CGCGCTGCCG
CTCGTGTGGG AGCGGACGTA CCGTTCCCGG CTTTCCGCGT ATGACGACGG CGAACTGGGT
GCGCGGTGGA TTACCCCCTA TACGACGCGA ATCGACATCA AGAACGGTCA GTGGATCTAT
CGCGATGCGG AAGGGCGCAG CATCGAGTAT CCGGCGCTTG CAGCCGGCGC GGTGCACGAC
GATCTGTCGG AGAACCTGAC GCTGTCGCGG CTCGACGATA CGTGGGTGAC GATCGCATAC
GGCCACGCCG TGCTGCATGT GTACGAGCGC CGCGGCGACG CGTTCCGGCT CGCGATGCAG
AAAGACCGCG CCGGAAATAC GATCACGCTC GACTACGATG CGCTTGATCG CCTGGCGCGC
CTGATCGACT CCAGTGGCAA TGTGCTCGCG TTCGAGCACG ACAAGCATGG CCGGATCCTG
CAGATCGAGC ACGTGCTCAA GGACGGTGCA CGCCGTACGC TGGCGAGCTA CGAGTACGAC
GCGGCAGGCG ACCTCGTGCG CGCGGTCGAT CGGCACGGCA ATGCGCGGAC GTATCAATAT
CGCCGTCACC TTGTGACGCG GTACACCGAC CGCACCGGCC GCGGGATGAC GCTCGAATGG
GATGGTGCGG ATGCCGACGA CAACGCGAAC GCGAAATGCA TCCGTGAATA TGCCGATGAC
GGCAGCCTCG AACTCCGGCT CGCGTGGAAC CCGAATATCC GCCTGACCTA TGTGACCGAC
GCGCTCGGTC AGATGACGCG CTACTACTTC AATATTCATG GTTACGTGTA CCGGATCGTG
TACCCGGACG GCAACCAGGA GTGGTTCCGG CGCGATGCGC ATCACAACCT CGTGCTGCAT
ATCCGCCAGG ATGGCAGCAT CGAGCGGCGG GAATACGACG CGCGCGGCAA TCTGGTCCTG
CACGAGCGTG CGGACGGCAG CGTCGTCGCG ATGGCATACG ACGACAAGGA TCAGATGATC
CGGCTCGTCG ATCCGAACGG ACACGTGTGG CAGCGCAAGT ACGACGATGC GGGCAACCTC
GTCGAGGAAA TCGATCCGCT CGAGCACTCG ACGAAGTACA AGTACAGCGA CAAGGGATTG
CCGACGCAGA TCACCGATGC GAAGGGCGGC TCGAAGGTAC TCGAGTACAA CGAGGCGGGC
CAGGTCACCC GCTATACCGA CTGCTCCGGA AAGAAGACGG AGTGGCGGTA CGACGATATT
GGCCGCGTGA TCGAGACCAA GGACGCATCC GGTGGCGTGG TTGCGTACGG TTATGGCGCG
AATGGCCAAT TGACGGAAAT CCGTTCGCCG GCCGGTGTCG AACACGTGCA GTACGACGCC
GAAGGGCGAA TGCTCACGCA TACGGATCAA CTCAATCGAT CGACGCGATA TGGCTACGAT
GCGGTTGGCC GCATTGCGAG CCGCGCGGAT GCGCTCGGGC AGACGATTGC GTATCGCTAC
GATCGTCTCG GCCGGTTGAG TGCGCTGACC GATGCCAACT TCGCGACGTA CCAGTTCCAC
TATGATCCGG CCGGGCGGCT GATCGAGGAA GTTGCGTTCG ACGGCAAGTC GACGCGCTAT
CAATACGATC CGGACAGCGG CCGCCTTGTT TCGGTCGATG AGGCGGGTTG CGTGACGTCG
ATCGATGTCG ACGCAAACGG CCGTCTGCTG AAGCGGGTCG CGGGGGAGAG CGAGGAGCGG
TTTGCCTACG ACCCGAGCGG CCGGCTGATT GACGCCGCGA ATCGATACAG CCGCGTGCAG
TTCTTCTTCG ATCCGATCGG CAATCTGGTG CGCGAGCATC ACGCGTACGA TCTGTTCGGC
GAACGACGCA GCTACGTGTG GCATCACGAA TACGACGAAC TCGGCAACCG GCGACGGACC
GTGCGGCCGG ATGGGCATGC CGTCGACTGG CTGATGTACG GTTCCGGCCA TGTGCACGGG
ATGCTGCTCG ATGGCGAGGA ACGTGTGCAG TTCGAGCGCG ATGATCTTCA TCGCGAGACG
GTGCGCGTGC TGTCGAGCAA GATCGGTCAG CGCACGCACT ACGATCCGGC AGGGCGCGTG
CTGCAGCAGA CGATTCAACG GTCGACGTCG CCCGCGCCGC TTGCCGAGCG GCGGTATCGC
TATGACGCGG CGGGGCAGTT GTCGCGCATC GAGGATAGCC GCAAAGGTGG GATCGACTAT
CGATACGATC CGGTCGGACG GTTGATCGAG GCGATCAGTC CGGTCGCGAA GGAACGGTTC
GCGTTCGATC CGGCGAGCAA CATCATCGAT CCGGTGCGGA CCACGGAGAC GCCGGCCTCT
CGTCCGAGCC CGGTGCGGCC GGAAAGCACG TTGCCGGTCG AGGTGCCCAA GGTGCTGGGC
AACCTGCTGA AGGCCTATGC GGGGATGCAC TTCGAGTACG ACGCGCGCGG GAATCTGGTG
CGCAAGCGTA CGCCGGCGGG TGAGCAGGAA TACGAGTGGG ACGAGTTCAA TCGCTTGCTG
TCTGCGCGGG TTGCGGAGAC GTCGCGGCAG AGTCAGGCGC GGTATTTCTA TGACGCGTTC
GGTCGGCGCA TTGCGAAGGA AGTGAACGGC GAGCGGACGG TGTTCGGGTG GGATGGGGAC
ACGCTCGCGT ACGAGAGCGA TGGCGGGCGG GGCACGCACT ATATCTACGA GCCGGGGACG
TTCGTGCCGC TGGCGCAGTA TGTGGCGCAG CCGGTCGACG GGATCGCGAC GCCGGAGTGG
AAGAGTACCG ATCGGTATGT GCCCGAGGAG GATCCGCTGC AGAAGGTGCC GGAGCGGCGA
GGCGGCGCGG TGCTGTTCTA TTATCACTGT GACCAGATCG GCACGCCGCA GCTGCTGACT
GATGGCGATG GTGACGTGGT GTGGGAGGCT TCGTACAAGG CTTGGGGGGA AGCGCGCGAG
GTTATTGCGC GGGCGTCGAA GGCGGCGGGG ATCGTGGTGA AGAACCCGCT GCGGTTTCAG
GGGCAGCAGG TTGATGATGA GACGGGGCTC TCGTATAACC GGCACCGGTA CTATGATCCG
AGTACCGGCC GGTTTGTCAG CAACGATCCG ATAGGGCTCC AAGGGGGGAT CAACCTTTTC
CAATATGCGG AAAATCCTGT CGTGTGGACG GATCCGCTTG GTCTCGCATC GAAGCTTTTG
TGCCCTCTTT GCTGTGACGG ATCACACGGG CGATCCAACA AGCAGGAAAG ACTGAAGGCC
CTAGCCGACG ATCCGTTGCA ACCAAGTTGG GTAAGAGGGT GGGTGCGAAA TGAATTGAGG
CACATCGCTA CCGGCAATCG TACGTCGGTT CGGCTACCTG GCAATTCACG GAACTCCCGG
ACGCCTGGTA AGGAGCTTGC TCACGGGCGG GAGACTGAAG CAAAGAATGG TTACTGCTAC
AGACATTCTG AGTTGCAAGA CGCCGACCTA CATAAGACTC AGCATCAAAT CGGAGGTTAC
TAA
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| Protein sequence | MAQQLPPGAE KEQAVTWLSD VSPKDVAAGG NRFDAWLRRI SGNHITFEDV KTFAGAVPIV
GNIMAMVDAL GDIAEIVEKR GGQVLDYMSL AINLLGIIPI PPTLAPFRMS ARPLLALVRH
ELLATRSNLG AAIISVLVTH INATCATEIE DFLNKLKAGL VELLDGCASK AEEIMLALAT
GMDKALHGQL FDANANLRRQ QQLAKKLADA RPWYSPSRVG DGIQFAYEGT KALGKKAVNK
TAGTMATLAP DAWLEPFRGT VTFLRTEAPK IATSIRSLAG SEEGKMMWLV VQLMEAVARV
KARAKLHEQS ADVKAAGTSQ AKKTRGQEGL EKTNGQAPSE GPGKSACKSC GVGASPASID
FAFGDETFSH VDFDLPGALP LVWERTYRSR LSAYDDGELG ARWITPYTTR IDIKNGQWIY
RDAEGRSIEY PALAAGAVHD DLSENLTLSR LDDTWVTIAY GHAVLHVYER RGDAFRLAMQ
KDRAGNTITL DYDALDRLAR LIDSSGNVLA FEHDKHGRIL QIEHVLKDGA RRTLASYEYD
AAGDLVRAVD RHGNARTYQY RRHLVTRYTD RTGRGMTLEW DGADADDNAN AKCIREYADD
GSLELRLAWN PNIRLTYVTD ALGQMTRYYF NIHGYVYRIV YPDGNQEWFR RDAHHNLVLH
IRQDGSIERR EYDARGNLVL HERADGSVVA MAYDDKDQMI RLVDPNGHVW QRKYDDAGNL
VEEIDPLEHS TKYKYSDKGL PTQITDAKGG SKVLEYNEAG QVTRYTDCSG KKTEWRYDDI
GRVIETKDAS GGVVAYGYGA NGQLTEIRSP AGVEHVQYDA EGRMLTHTDQ LNRSTRYGYD
AVGRIASRAD ALGQTIAYRY DRLGRLSALT DANFATYQFH YDPAGRLIEE VAFDGKSTRY
QYDPDSGRLV SVDEAGCVTS IDVDANGRLL KRVAGESEER FAYDPSGRLI DAANRYSRVQ
FFFDPIGNLV REHHAYDLFG ERRSYVWHHE YDELGNRRRT VRPDGHAVDW LMYGSGHVHG
MLLDGEERVQ FERDDLHRET VRVLSSKIGQ RTHYDPAGRV LQQTIQRSTS PAPLAERRYR
YDAAGQLSRI EDSRKGGIDY RYDPVGRLIE AISPVAKERF AFDPASNIID PVRTTETPAS
RPSPVRPEST LPVEVPKVLG NLLKAYAGMH FEYDARGNLV RKRTPAGEQE YEWDEFNRLL
SARVAETSRQ SQARYFYDAF GRRIAKEVNG ERTVFGWDGD TLAYESDGGR GTHYIYEPGT
FVPLAQYVAQ PVDGIATPEW KSTDRYVPEE DPLQKVPERR GGAVLFYYHC DQIGTPQLLT
DGDGDVVWEA SYKAWGEARE VIARASKAAG IVVKNPLRFQ GQQVDDETGL SYNRHRYYDP
STGRFVSNDP IGLQGGINLF QYAENPVVWT DPLGLASKLL CPLCCDGSHG RSNKQERLKA
LADDPLQPSW VRGWVRNELR HIATGNRTSV RLPGNSRNSR TPGKELAHGR ETEAKNGYCY
RHSELQDADL HKTQHQIGGY
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