| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0153 |
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| Symbol | |
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| ID | 4310895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 184534 |
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| End bp | 186798 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638147932 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_772048 |
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| Protein GI | 115350209 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.372833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGCG CTGTCGTGGA ACGGTTGAAC GCGGCGTTCG TGCACCATCA GGCCGGGCGC
TTCGACGACG CTCGCATGCT GTACGAGGCG ATCCGGCGCG ACGAGCCGGA TCAGCCGGAT
GCGACGCACT TCCTCGGGCT GCTCGCGTGC CAGCTCGGCC AGTTTCCGGC CGGCCTCGCG
CTGATGGAGC GCGCGATCGC GCTGCGCGCC GATCCCGTCT ACCTGAACAA CTTCGGCAAC
ATGCTGCGCG CGCACGGCCG GCTCGGCGAT GCGATCGGCG CGTACCGGCG TGCGATCGCG
CTCGCGCCCG ACTATGCGGA AGCGCACAGC AACCTCGGCA ACGCGTTGCG CGACGCGGGC
GACGCGGACG CCGCGATGCT GAGCTGCGCG CAGGCGCTCG CGCTGCGCCC CGATTACGCG
CCGGCGTTCA ACAACCTCGG TAACGCACTG CAGGACAAGG GCGAACTGGA CGCCGCGGCG
CGCGCGTACG AGAAGGCGAT CGCACTCGAT CCCGGCTACG CGCAGGCCCG CTTCAACCAG
GGCAACGTAT TGCGTGCGCA GCGCCGGCCC GACGAGGCGA TCGCGTGCTA CCGCGAAGCG
ATCGCGCTGC AACCGCACCT GCATGCCGCG CATCACGCGC TCGGCGTGCT GCTGTTCGAG
CGCGATGATC GCGAGGCCGC GATCGCGAGC CTCACCCGCG CGGCGGAATC GGGTGAAGCG
GACTGCCTGT TCCACCTCGC GGCCGCGCTC GAGCGTGCAG GCGATCTCGA CGGCACGGTG
GCGAGCCTGC GGCGTGCGCT TGCCGCGGCG CCCGATCGTG CGGACCTGCA TCACCACCTC
GCGCAGACGT TGGTCCGGCA GGGCAAGCGG CGTGAAGCGC TCGACAGTTG CCGGATCGCG
CTGTCGCTGC CGAACCCGAC CGCGCAGATG CACGCAGTGA TGGGCGACAT CCTGTGCGCG
ATGTGGCACC TCGATGCGGG GCTCGCGAGC TACGATCGTG CGCTCGAAAT CGATCCCGCG
TTCCGCAACG CACACTCGGG CCGCATGTTC CACGCGGCCG GCACCGACCG GCTGTCGCCC
ATGCAACTCC TCGAACGCGC GCGCGAATTC GGCGCGCGGA TGGCCGCGCA GGCGTCGCCG
CGTACGCATG TGCCGCGGCC GGCCGCCGGG CGCGTGTTGC GTGTCGGGTT CGTGTCCGGA
GACCTGAAGT CCCATCCGGT CGCGGTGTTC CTGCTGAGCG TCGTCGCGGC GCTCGATCCG
TCGCGCATCG CGGCGGTGGC CTACGCGACG CAGTCGGTGG AGGACGACAC GACTGCGGCG
CTCAAGCGCC ATTTCGCGCT GTGGCGCGAC ATCACCGCGC TCGATGATCG CGCGGCCGCC
GACCTGATCG TGAATGACCA CATCGACGTG CTGGTCGATC TGAGCGGCCA TACCGCGTCG
AACCGGCTGC CGTTGTTCGC ATGGAAGCCG GCACCGGTGC AGGCGACCTG GCTCGGCTAT
TTCGCGACGA CCGGCATCGC CGCGATCGAC TACGTGATCG GCGATCGCCA CGTGCTCCCC
GACGACGAAG CGCATCACTT CGCCGAGCGG CCGTGGCGGC TGCCCGACAG TTACCTGTGC
TTCACGCCGC CCGCACAGCC GCTCGACGTC GGGCCGCTGC CGGCCGAGCG CGAAGGTGTC
GTCACGTTCG GATGCCTGAA CAATGCGAAC AAGATCGGCG ACGCCGTCGT CGCGCTGTGG
TCGCGCGTGC TGCATGCGGT ACCCGGTTCG CGCCTGTTGC TGAAGTCGGC GCAGCTCGAC
GAAGCCGCGC TGCGCACGAG CCTCGCCGCG CGCTTCGCGG CACACGGTAT TCCGGCAGAG
CGCCTGCTGC TGCGCGGCGG ATCGAAGCGG CTCGCGCACA TCGCCACGTA CAACGACATC
GACATCGTGC TCGATCCGTT CCCGTATCCG GGCGGCACGA CGAGCATGGA AGGACTGTGG
ATGGGCGCGC CGTTCATCAC GCGGCGCGGC GACCGCTTCC TGTCGCATAT CGGCGAAAGC
ATCCTGCATA CGCTCGGGAT GCCTGAATGG ATCGCGGACA ACGACGACGA CTATGTCGCG
AAGGCGGCCG CGTTCGCGCA GGATCTGCCG CATGTCGCGG CCGTGCGGGC CGGGCTGCGC
GAGCGGCTGC TGCGCTCGCC GCTGTGCGAT GCTCCGCGCT TCGCCCGCCA TCTCGAAGCG
GCGTTCGCGC AGATGGTCGA CGCGGCGGCG GTGGCCGCGC GCTAG
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| Protein sequence | MTGAVVERLN AAFVHHQAGR FDDARMLYEA IRRDEPDQPD ATHFLGLLAC QLGQFPAGLA
LMERAIALRA DPVYLNNFGN MLRAHGRLGD AIGAYRRAIA LAPDYAEAHS NLGNALRDAG
DADAAMLSCA QALALRPDYA PAFNNLGNAL QDKGELDAAA RAYEKAIALD PGYAQARFNQ
GNVLRAQRRP DEAIACYREA IALQPHLHAA HHALGVLLFE RDDREAAIAS LTRAAESGEA
DCLFHLAAAL ERAGDLDGTV ASLRRALAAA PDRADLHHHL AQTLVRQGKR REALDSCRIA
LSLPNPTAQM HAVMGDILCA MWHLDAGLAS YDRALEIDPA FRNAHSGRMF HAAGTDRLSP
MQLLERAREF GARMAAQASP RTHVPRPAAG RVLRVGFVSG DLKSHPVAVF LLSVVAALDP
SRIAAVAYAT QSVEDDTTAA LKRHFALWRD ITALDDRAAA DLIVNDHIDV LVDLSGHTAS
NRLPLFAWKP APVQATWLGY FATTGIAAID YVIGDRHVLP DDEAHHFAER PWRLPDSYLC
FTPPAQPLDV GPLPAEREGV VTFGCLNNAN KIGDAVVALW SRVLHAVPGS RLLLKSAQLD
EAALRTSLAA RFAAHGIPAE RLLLRGGSKR LAHIATYNDI DIVLDPFPYP GGTTSMEGLW
MGAPFITRRG DRFLSHIGES ILHTLGMPEW IADNDDDYVA KAAAFAQDLP HVAAVRAGLR
ERLLRSPLCD APRFARHLEA AFAQMVDAAA VAAR
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