| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0052 |
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| Symbol | |
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| ID | 4308720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 60714 |
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| End bp | 63047 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638147830 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_771947 |
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| Protein GI | 115350108 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGAA ATCGCTTCGT TATGCGGCGC GTCGCCACGA CCCTGATCGT CGCCGGCATC
ATCGTCTCGC AAGCCGCCTA CGCTCAGGTC ACGCTCAATT TCGTGAATGC GGATATCGAC
CAGGTCGCGA AGGCGATCGG CGCCGCAACC GGCAAGACCA TCATCGTCGA CCCCCGCGTG
AAGGGGCAGC TCAACCTCGT ATCCGAACGG TCCGTGCCGG AAGACCAGGC ACTGAAGACG
CTGCAGTCGG CGCTGCGCAT GCAGGGCTTC GCGCTCGTGC AGGATCACGG CGTGCTGAAG
GTCGTGCCCG AGGCCGACGC GAAGCTGCAG GGCGTGCCGA CCTATATCGG CAATGCGCCG
CGCGCACGCG GCGACCAGGT CATCACGCAG GTGTTCGAGC TGCACAACGA ATCGGCGAAC
AACCTGCTGC CGGTGCTGCG GCCGCTGATC TCGCCGAACA ACACGGTCAC CGCCTACCCG
GCGAACAACA CGATCGTCGT CACCGATTAC GCGGACAACG TGCGCCGCAT CGCGCAGATC
ATCGCAGGCG TCGACAGCGC CGCGGGGGCG CAGGTGCAGG TCATACCGCT GCGTAACGCG
AACGCGATCG ACCTCGCCGC GCAGCTGCAG AAGATGCTCG ACCCCGGCGC GATCGGCAAT
AGCGACGCGA CGCTGAAGGT ATCGGTCACG GCCGACCCGC GCACCAATTC GCTGATGCTG
CGCGCATCGA GCGCATCGCG CCTCGCGGCG GCGAAGCGCA TCGTGCAGCA GCTCGACGCG
CCGAGCGGCG TGCCCGGCAA CATGCACGTC GTGCCGTTGC GCAACGCCGA TGCGGTCAAG
CTCGCGAAGA CGCTGCGCGG GATGCTCGGC AAGGGCGGCA ACGACAGCGG CTCGTCGGCA
TCGTCCAACG ATGCGAACAG CTTCAACCAG AGCGGCGGCT CGTCGGCGAG CGGCAACTTC
TCGACCGGCA CGTCCGGCAC CCCGCCGCTG CCGTCCGGCG GCCTCGGCGG CGGTTCGTCT
TCGTCGTCGG CCTACGGCAG CGGGTCGTCG GGCAGCGGTG GCGTCGGCAG CGGCGGCCTG
CTCGGCGGCG ACAAGGACAA GAGCGACGAC AACCAGCCGG GCGGGATGAT CCAGGCCGAT
GCGGCCACCA ATTCGCTGAT CATCACCGCG TCCGATCCGG TCTACCGGAA CCTCCGCTCG
GTGATCGACC AGCTCGACGC GCGGCGTGCG CAGGTCTATA TCGAGGCGCT GATCGTCGAG
CTGAACTCGA CGACGCAAGG CAACCTCGGC ATCCAGTGGC AGGTGGCGAG CGGCCAGTTC
CTCGGCGGCA CGAACCTGGC ACCCACGGCC GGAACCGGCC TGGGCAACAG CATCGTCAAC
CTGACCAGCG GCGGCACGGC CGCCACCACC GGGCTGGCCG CCAATCTCGC GGGCCTGAGC
CAGGGGCTCA ACATCGGCTG GCTGCACAAC ATGTTCGGCG TGCAGGGGCT CGGCGCGCTG
CTGCAGTATT TCGCGGGCGT GAGCGATGCG AACGTGCTGT CGACGCCGAA CCTGATCACG
CTCGACAACG AGGAAGCGAA GATCGTCGTC GGCCAGAACG TGCCGATCGC GACCGGCTCG
TATTCGAACC TGACGAGCGG CACGACGAGC AACGCATTCA ATACCTACGA CCGCCGCGAC
GTCGGCCTGA CGCTGCACGT GAAGCCGCAG ATCACCGACG GCGGGATCCT GAAGCTGCAG
CTCTATACCG AGGATTCGGC GGTCGTCAGC GGTACCACGA ACGCGCAGAC CGGCCCGACC
TTCACGAAGC GCTCGATCCA GTCGACGATC CTCGCGGACA ACGGCGAGAT CATCGTGCTC
GGCGGCTTGA TGCAGGACAA CTACCAGGTG TCGAACAGCA AGGTGCCGCT GCTCGGCGAC
ATCCCGTGGA TCGGCCAGCT GTTCCGTTCG GAATCGAAGC AGCGCCAGAA GACCAACCTG
ATGGTGTTCC TGCGCCCGGT GATCATCTCC GATCGCAGCA CCGCGCAGGA AGTCACGGCC
AACCGCTACG ACTACATCCA GGGCGTGACC GGCGCGTACA AGTCGGACAA CAACGTGATC
CGCGACAAGG ACGATCCGGT CGTCCCGCCG ATGCCGCTGG GTCCGAGCCA GGGCGGTACG
CCCGCCGGGA ACCTGTTCGA CCTCGACAAG ATGCGTCGCC AGCAGTTGCA GCGTCAGGTC
GCGCCGGTGC CGGCCCAGCC GCTGCCCGAG GCGACGCCCG CGCAGCCGCA AGGCGTGCCG
CAGCAGTCGG TGCCGCAACA GCCGCTGACC GCCACGCCGG GAGCCTCGCA GTGA
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| Protein sequence | MTRNRFVMRR VATTLIVAGI IVSQAAYAQV TLNFVNADID QVAKAIGAAT GKTIIVDPRV
KGQLNLVSER SVPEDQALKT LQSALRMQGF ALVQDHGVLK VVPEADAKLQ GVPTYIGNAP
RARGDQVITQ VFELHNESAN NLLPVLRPLI SPNNTVTAYP ANNTIVVTDY ADNVRRIAQI
IAGVDSAAGA QVQVIPLRNA NAIDLAAQLQ KMLDPGAIGN SDATLKVSVT ADPRTNSLML
RASSASRLAA AKRIVQQLDA PSGVPGNMHV VPLRNADAVK LAKTLRGMLG KGGNDSGSSA
SSNDANSFNQ SGGSSASGNF STGTSGTPPL PSGGLGGGSS SSSAYGSGSS GSGGVGSGGL
LGGDKDKSDD NQPGGMIQAD AATNSLIITA SDPVYRNLRS VIDQLDARRA QVYIEALIVE
LNSTTQGNLG IQWQVASGQF LGGTNLAPTA GTGLGNSIVN LTSGGTAATT GLAANLAGLS
QGLNIGWLHN MFGVQGLGAL LQYFAGVSDA NVLSTPNLIT LDNEEAKIVV GQNVPIATGS
YSNLTSGTTS NAFNTYDRRD VGLTLHVKPQ ITDGGILKLQ LYTEDSAVVS GTTNAQTGPT
FTKRSIQSTI LADNGEIIVL GGLMQDNYQV SNSKVPLLGD IPWIGQLFRS ESKQRQKTNL
MVFLRPVIIS DRSTAQEVTA NRYDYIQGVT GAYKSDNNVI RDKDDPVVPP MPLGPSQGGT
PAGNLFDLDK MRRQQLQRQV APVPAQPLPE ATPAQPQGVP QQSVPQQPLT ATPGASQ
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