| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6627 |
|---|
| Symbol | |
|---|
| ID | 4308506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008385 |
|---|
| Strand | - |
|---|
| Start bp | 34851 |
|---|
| End bp | 35615 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638147766 |
|---|
| Product | conjugal transfer protein TrbJ |
|---|
| Protein accession | YP_771704 |
|---|
| Protein GI | 115345519 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 0.331539 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGA AGTTTTTAGC CGCTAAATTG GCCCTCGTCA TTGCTGTTTC GAGCACGCTG
GCGGTCACAC CTGTGCAGGC TGGCATCCCC GTCATCGACG GCACCAACCT GTCGCAGAAC
ATCATGACGG CCATCGAATC GGTGGCCCAG ACGCTCAAGC AAATTGAGCA GTACAGCACC
CAGCTCCAGC AGTATCAAAA CCAACTCCAG AACACGATGG CCCCGGCCGC GTATATCTGG
GATCAGGCGC AATCGACCAT CAACGGGTTG ATGAACGCGG TCAACACGCT GGATTACTAC
AAGACCCAAC TCGGCAGCCT GGACAGCTAC ATCGGCAAGT TCCAGGACGT GAACTACTAC
AAGAACTCGC CGTGCTTTAC GGCGGCAGGG TGCTCCGACG CGGAACGCGC AGCACTTCGG
AATGTGGCCC AGCTCGCGAG CGAGTCGCAG AAGAAGGCCA ACGATGCCTT GTTCAAGGGC
CTCGATAGGC AGCAAACGAA TCTCACGGCC GATGCAGCGA CGTTGCAGCG TCTTCAATCG
GCAGCGCAGG GCGCGCAGGG CCAAATGCAG GCCATCGGCT ACGCCAACCA GCTCGCCAGC
CAGCAGGCCA ACCAGCTCTT GCAGATTCGT GGCCTGCTGA TCGCGCAGCA GAACGCGATG
GCAACCAAGA TGCAGGCCGA CGCCGACAAG GAAGCCCAGC AGGCGGCAGC GGCCGCACAA
CTGCGCCAGG GCAGCTACCG GGCCAGCCCG GCGCGCACCT GGTAA
|
|---|
| Protein sequence | MKPKFLAAKL ALVIAVSSTL AVTPVQAGIP VIDGTNLSQN IMTAIESVAQ TLKQIEQYST
QLQQYQNQLQ NTMAPAAYIW DQAQSTINGL MNAVNTLDYY KTQLGSLDSY IGKFQDVNYY
KNSPCFTAAG CSDAERAALR NVAQLASESQ KKANDALFKG LDRQQTNLTA DAATLQRLQS
AAQGAQGQMQ AIGYANQLAS QQANQLLQIR GLLIAQQNAM ATKMQADADK EAQQAAAAAQ
LRQGSYRASP ARTW
|
|---|
| |