| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_2129 |
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| Symbol | |
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| ID | 4285616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Maricaulis maris MCS10 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008347 |
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| Strand | - |
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| Start bp | 2321113 |
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| End bp | 2323245 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638141631 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_757359 |
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| Protein GI | 114570679 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.22382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAT CGGCTGAAGC CAACGACGCG ACGGAAAACT CGGACGGTCC GCTGCTGGAC
CTGACCGACC AGTCCGTCAA GAACATGGTG AAGACCGCCA AAAAGCGCGG TTATGTCACC
CATGATGAGC TGAACGCGGT GTTGCCGAGC GAGGAATTCT CGTCCGAGCA GATCGAAGAC
GTGCTCGCAC AATTGTCCGA GATGGGCATC AATGTTGTCG ACAATGACAG CGATGTGGAC
GACGACTCCG CCGAAACGCC GAAGCCGGCC AAAGGCGCAG CCTCCGCGGC CACCACATCA
TCGGATGATG ATGAGGAAGA CAGTGATGAC GAGGAGGAGA GCGACAGCCG TGCTGTGGCC
GGCGCCTCCA AGACAGCCGT CACCGGTCTC AACACCCCGT CCTCCGCCGA TCGCACCGAT
GACCCGGTCC GCATGTATCT GCGCGAGATG GGTTCGGTCG AGCTCCTGTC ACGCGAAGGC
GAAATCGCCA TCGCCAAGCG CATCGAGGCC GGTCGCAATG CGATGATCCG CGGCCTGTGC
GAGAGCCCGC TGACCTTCGA AGCCATCATG GTCTGGCGCG ACGAGCTGCA GGAGGGCCAG
GTCCTTCTGC GCGACATCAT CGATCTCGAC GCCACCTATG GCGGCCAGCA GGCCGAGGCT
GCTGAAGATG ACGATGAAAA CGCCGACGGT ACGGGCGAGG GCGAAACCCC GACGCCGGCC
GGTGGCACAA CGCCGAAACC CGAATCCGAT GACGAGGACG ACGGCGAGGA TGGCGAAAAG
AAGTCGGAAA AGTCCGGCGA TGACGATGAA GAAGACGGTG AAACATCATC CAGCGATGAT
GATGACGATG ATGATGAAGA CGGTGTCTCG CTGTCGCTGT CGGCCATGGA GGCCGAACTG
CGCGATGGCG TGATGGAGAC ACTCGATTCC ATCGCCACCG ATTTTGCCGC CTTCCGCAAG
CTCCAGGACA AGCTGGTTGC CGCCCGCATC GAGGGCAAGG ACCTGACCAA GCAGTCGCGT
GAGAAATACG AGGGCTTCCA GAACGCCATC GTGACCAATC TCAACACGAT GCACCTGAAC
AATGCCCGGA TCGAGGCGCT GGTCGAACAG CTCTATGCGA TCAACAAGGA ACGCATGGCG
CTGGAAGGCA AGCTGCTGCG CATGGCCGAC GCCCATGGCG TGCCGCGCGC CCAGTTCATG
GACAGCTATT TCGGCAATGA GCTGAACCCG GAATGGCCGA CCTCGATGGC GTCCACCTCC
AAGGCCTGGG CCCGCTTCAT CGACCGCGAA GGCGTTGATG CCGGCAAGAT CCGTGATGAT
CTCGCCGACC TCACCCAGCG CGCCGGCGTG CCGATCGAAG ACCTGCGCCG CATCGTCCGC
ACCGTCCAGA AGGGCGAGCG CGAGGCCCGT GTGGCCAAGA AGGAAATGGT CGAGGCCAAT
CTGCGTCTCG TCATCTCCAT CGCCAAGAAA TACACCAATC GCGGCCTGCA ATTCCTGGAT
CTGATCCAGG AGGGCAATAT CGGCCTGATG AAGGCCGTCG ACAAATTCGA GTATCGCCGC
GGTTACAAAT TCTCGACCTA TGCCACCTGG TGGATCCGTC AGGCGATCAC CCGCTCGATC
GCCGACCAGG CGCGCACCAT CCGTATCCCG GTGCACATGA TCGAGACGAT CAACAAGATC
GTCCGCACCA GCCGCCAGAT GCTGCACGAA ATCGGTCGCG AACCGACCCC GGAAGAGCTG
GCCGAAAAGC TCGCCATGCC GCTGGAAAAA GTGCGCAAGG TGATGAAGAT CGCCAAGGAG
CCGATCTCCC TTGAAACGCC GATCGGCGAT GAGGAAGACA GCCATCTGGG CGATTTCATC
GAGGACAAGA ATGCCGTCCT GCCGATCGAT GCCGCCATCC AGGCCAATCT GCGCGAAACC
ACGACCCGCG TCCTCGCCAG CCTCACCCCG CGTGAGGAAC GCGTCCTGCG CATGCGTTTC
GGCATCGGCA TGAATACCGA CCACACGCTG GAAGAAGTCG GCCAGCAATT CTCGGTCACC
CGCGAACGCA TCCGCCAGAT CGAAGCCAAG GCGCTGAGGA AGCTCAAGCA TCCGAGCCGG
TCTCGGAAGC TGCGGAGTTT CCTGGATAAT TGA
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| Protein sequence | MSKSAEANDA TENSDGPLLD LTDQSVKNMV KTAKKRGYVT HDELNAVLPS EEFSSEQIED
VLAQLSEMGI NVVDNDSDVD DDSAETPKPA KGAASAATTS SDDDEEDSDD EEESDSRAVA
GASKTAVTGL NTPSSADRTD DPVRMYLREM GSVELLSREG EIAIAKRIEA GRNAMIRGLC
ESPLTFEAIM VWRDELQEGQ VLLRDIIDLD ATYGGQQAEA AEDDDENADG TGEGETPTPA
GGTTPKPESD DEDDGEDGEK KSEKSGDDDE EDGETSSSDD DDDDDEDGVS LSLSAMEAEL
RDGVMETLDS IATDFAAFRK LQDKLVAARI EGKDLTKQSR EKYEGFQNAI VTNLNTMHLN
NARIEALVEQ LYAINKERMA LEGKLLRMAD AHGVPRAQFM DSYFGNELNP EWPTSMASTS
KAWARFIDRE GVDAGKIRDD LADLTQRAGV PIEDLRRIVR TVQKGEREAR VAKKEMVEAN
LRLVISIAKK YTNRGLQFLD LIQEGNIGLM KAVDKFEYRR GYKFSTYATW WIRQAITRSI
ADQARTIRIP VHMIETINKI VRTSRQMLHE IGREPTPEEL AEKLAMPLEK VRKVMKIAKE
PISLETPIGD EEDSHLGDFI EDKNAVLPID AAIQANLRET TTRVLASLTP REERVLRMRF
GIGMNTDHTL EEVGQQFSVT RERIRQIEAK ALRKLKHPSR SRKLRSFLDN
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