| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_1690 |
|---|
| Symbol | |
|---|
| ID | 4285693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Maricaulis maris MCS10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008347 |
|---|
| Strand | - |
|---|
| Start bp | 1857666 |
|---|
| End bp | 1859204 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638141178 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_756920 |
|---|
| Protein GI | 114570240 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000356415 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0111371 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCG CATATCATGA AACAGGCCCC GCTTACCCGG CGGCCGCCCG GCCGGCTGGC
GCCCCGAGAG GGGAGTTGGA CCTGTTCGAC GTGATCGCGC TGGCGTGGTC TCAGAAAGGC
TTTATCGCGT TGATTTTCGC GCTTATTTTC GCCGTTGGCG TGGGCGCGTC ACTGACCTTG
CTGAAGCCGA GTTATACATC CGATACGCGG CTTCTCGTTC TGCTTGATTC GAATCCCACT
CCGACAGCGG CCGGTGTCGG TGACGCCTTC ATGCTTGATC AGGTCATGCA GTCGGAGAGC
GAATTGCTCA GTTCCGAGGC GGTGCGCCGG CTGGCGCTGG AGACGCTGGG CGCCGATGTG
GTGCTGGGCG AGCAAGCCGG CCTCAATGCG GACGGGCTGG CATTGCGGGA GTTGCGCGCG
AATTTCAGCC TGTCGCGGGA GCCCAATTCA TCGGCCATCA ATGCCAGCTT CAAATCCCCG
TCGGCGGAAA GGTCGGCGCT GATCCTGAAC AGTATTGTCG ATGCCTATCT GGCCTATCGC
GAGCAGGTCC TGTTCGAGAC CGGCATTACC GGACTGGAAG TCCGGCGCGC CCAGGCTGAT
GAAGCGGTCG CGGCGGCCCG GGCGGAATTG AATACCTTCC TGCAAGCCAA TGATCTCGCC
AATTTCGAGG CCGAACGCCT GACCGCCGAC AATCTGGTTG GCAATCTCTC CGAGCGCGCG
GCCCAGGCCC GGGCTGAACG GGATTCGGCG ATGGCCGGTG CCGCGGCCCT GCGTGAACGA
CTGGGCCAGA TCCCCGAGAG CATCGAGCTC TATGTGGAAA ACGGCGTGTC CGGTGTCCTG
CTCGACCGCC GGGCCGAGCG GGCGAGCCTG CTGGCGCGCT ACCAACCCGC CGCTCCGGCT
GTGCAGGCCG TCGAGCGCGA GATCGAGGCC ATCGAGGAAT TCATCCAGTC CGGCGCCACG
GTCGGCGAGG GGCAGCGACG TACCGGTGCC AATCCGGTGC GGCAAGCGCT GGAATCAGAG
CTGGCAACCC GTGAGGCCAA TGCCGAGGCA CAGGCCTCGC TGGCGACGGC CCTGGAGGGC
CAGGCGCGCA GCAATCGTGC GCTCGTCTCC CGCCTGCGCC AGTTGGAACC GGAATATACC
CGACTGGCCC AGAACATCAC CGCTGCCGAA GAAGCTGCCG GCGCCGTTGC CGCGCTTGAG
GCCACCGCTT CGGCCCGCCG TTCGCCGAGC CTGGGCGCGG CCGACGCCGT CCGCCTGATC
GACCGGGCTG CCGCGCCCAT GGAAGGCAGC TCGATGAAGA AGCTCGGCCT GATCGGGTCC
TTCGTCGCGG CTGCGGGGAT CGCGCTCTTT CTGGGATTGT TGCGCGGCTA CTGGCTGACC
TATGTGCGTG CCGCTGCCCT GCCACGTTCG CGCCCGGCGG CCCCGGTCGT TGCGGCCCAA
CCGGCCGGGC CGGTTCAGGA CGCGCGGCAG CCTGTTGCCG CCAATGATCC CTTCGACGGA
CTGCCGATCC TCGCTCATGT CGCGGACCGG TCAATGTAA
|
|---|
| Protein sequence | MTRAYHETGP AYPAAARPAG APRGELDLFD VIALAWSQKG FIALIFALIF AVGVGASLTL
LKPSYTSDTR LLVLLDSNPT PTAAGVGDAF MLDQVMQSES ELLSSEAVRR LALETLGADV
VLGEQAGLNA DGLALRELRA NFSLSREPNS SAINASFKSP SAERSALILN SIVDAYLAYR
EQVLFETGIT GLEVRRAQAD EAVAAARAEL NTFLQANDLA NFEAERLTAD NLVGNLSERA
AQARAERDSA MAGAAALRER LGQIPESIEL YVENGVSGVL LDRRAERASL LARYQPAAPA
VQAVEREIEA IEEFIQSGAT VGEGQRRTGA NPVRQALESE LATREANAEA QASLATALEG
QARSNRALVS RLRQLEPEYT RLAQNITAAE EAAGAVAALE ATASARRSPS LGAADAVRLI
DRAAAPMEGS SMKKLGLIGS FVAAAGIALF LGLLRGYWLT YVRAAALPRS RPAAPVVAAQ
PAGPVQDARQ PVAANDPFDG LPILAHVADR SM
|
|---|
| |