| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1793 |
|---|
| Symbol | |
|---|
| ID | 4283460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | + |
|---|
| Start bp | 2047327 |
|---|
| End bp | 2048787 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638138676 |
|---|
| Product | Serine phosphatase RsbU regulator of sigma subunit-like protein |
|---|
| Protein accession | YP_754462 |
|---|
| Protein GI | 114567308 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTGAAAC TGCTCCGCAG TTTCTTCCGA TGCTTTAAAT CAAATTTTTT TTGCTTTTGC
TTAAATAGCA GGCGTGGAAC TGTTGGAAGG TGTTTCAAGA TAAGTGAGAT CATTGACCTG
TTAATCAATT TAATTAAAAA CATGGCAGTC ATTATCGTAC TGGCCTATGT ATTAACTAGA
ACAAGAGCGT TTGCAGCCAT GATGAATAAA CAGACCATGA ATTGGCGGCA ACAGGCCACC
TTGATTCTGG TTTTTGGGAT ATTTTCTATC TTTGGCACTC TGAGCGGAAT CAATATTAAC
GGCGCTATTG CCAATATCCG TGATCTGGGT CCCGCAATTG CCGGATTGGT AGGGGGGCCT
CTGGTAGGAT TTGGAGCCGG ATTTATCGGA GGATTGCATC GTTACAGTTT GGGTGGGCTT
ACGTGCCTAC CCTGTTCTGT TGCTACCGTT CTGGCCGGGC TGACCGGGGG CTTGATTAGT
CAATTCAAAA AAAACGAATT CATCACTATC CAGGAAGCTG TCATATTTAT GGCCCTTTTT
GAAGCTTTTC ATATGGGCTT GAATCTAATA ATGGTAAAAC CCTTCGATCA AATCTATGTA
ATCATTAAAA ACGTGAGCCT GCCGATGATA TTTACCAACG CCCTGGGGAT GGGAATATTT
GTTTTTATAA TTCATAACCT GGTTCGGGAA AAAGAAATGC AAAAACAAAA AGAATTAATT
GAAAGCGAGC TGACGGTGGC CCGCGAGATT CAGATGAGCA TTATCCCCAA AATCTTCCCG
CCTTTTCCCG AACGGCCGGA ATTTGACCTC TTTGCTGTTC TGGAACCGGC CAAGGAAGTG
GGGGGAGATC TCTATGACTA TTTCCTCCTG GACGATGATC ATCTCTGTTT CACCATTGGC
GATGTATCGG GTAAAGGGGT GCCGGCATCC CTGTTTATGG CGGTTACCAA GACACTGATC
AAGGCCAAGG CGGATATTCG CCTGGAACCG GATGAGATCC TCTATGCAGT AAACAACGAT
CTCTGTGCAG ATAATGATTC GGGGATGTTT GTGACTGAAT TCCTGGGGAT ATTAACTATC
TCCAGCGGTG AAATAGTCTA TAGCAATGGG GGGCATAACC TGCCTTATAT ACTTCGCAAA
GAGGGAACAA TAAAAATGCT GCCTCGTATG GCAGGAATGG CCCTGGGGGT TATGGAAGAG
ATACCTTATA GCCAGGCCAG GGTGAAATTG AATCCCGGAG ACAGTCTGGT GATGTATACG
GATGGCGTAA CCGAAGCCAT GAATGATAGT GGCGAACTTT TCGGGGAAGA AAGGCTGGAA
AGAAACCTGG CGGGAATTAC CGGCTATACT GCCCGCGAAG AGGTGGAAGT CATTTTACGC
TCTACCCGCG ACTTTGTGCA AGAAGCCAGT CAATCTGATG ATATCACCAT ACTGGTTCTG
CAGTTTATTG GAGGAAAGTA A
|
|---|
| Protein sequence | MLKLLRSFFR CFKSNFFCFC LNSRRGTVGR CFKISEIIDL LINLIKNMAV IIVLAYVLTR
TRAFAAMMNK QTMNWRQQAT LILVFGIFSI FGTLSGININ GAIANIRDLG PAIAGLVGGP
LVGFGAGFIG GLHRYSLGGL TCLPCSVATV LAGLTGGLIS QFKKNEFITI QEAVIFMALF
EAFHMGLNLI MVKPFDQIYV IIKNVSLPMI FTNALGMGIF VFIIHNLVRE KEMQKQKELI
ESELTVAREI QMSIIPKIFP PFPERPEFDL FAVLEPAKEV GGDLYDYFLL DDDHLCFTIG
DVSGKGVPAS LFMAVTKTLI KAKADIRLEP DEILYAVNND LCADNDSGMF VTEFLGILTI
SSGEIVYSNG GHNLPYILRK EGTIKMLPRM AGMALGVMEE IPYSQARVKL NPGDSLVMYT
DGVTEAMNDS GELFGEERLE RNLAGITGYT AREEVEVILR STRDFVQEAS QSDDITILVL
QFIGGK
|
|---|
| |