| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_1123 |
|---|
| Symbol | |
|---|
| ID | 4282959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | + |
|---|
| Start bp | 1298962 |
|---|
| End bp | 1299891 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638137995 |
|---|
| Product | DNA ligase, putative |
|---|
| Protein accession | YP_753804 |
|---|
| Protein GI | 114566650 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | [TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.91674 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATAT TCTTGCGAGA AATCCGCAGT ATGGACCCGA TAAATTGCGA GCAAGCTTTT
GACAGCGATG ATTTTCTTTA TCAGGTGAAA TGGGATGGGG TGCGGATGCT GGTTGCTGTT
GCGGGAGAAC AAGTTAGCCT GCTCAACAAA AGGGGAAACC TGCGTAGCAG GCAGTATCCT
GAATTACAGA ATCTGCCCAA TTTGATCAGG GCCAGTACTG CGGTATTGGA TGGAGAAATT
GTGGTGCTCC GTGAGGGTAA ACCCAGCTTT CCAGCGGTGA TGCAAAGAGA TAACTGTCGG
AATCCAATGA AGATTCAACA TTTAAGTAAA ACTTTGGCCA TTTCCTATAT GGTTTTCGAT
CTTCTTTATC TTAATGGTAG AGATTTAAGG TCAGCAAGCT TGGTAGACCG CCTCTCTCAA
CTGGCGGAAC TCTTTGATAA TCAAGGTTGC CTTTACCTGG TGGAGAGTTT TTCTCAGGGA
ACTATCCTCT TTGATTCGGT TCAGAGGGCG GGCCTGGAGG GAATAGTAGC CAAAAAAAAG
AACAGTTTCT ACCGCCCGGG AAAACAACAT GATGATTGGT TTAAAATCAA ATGTCGTTGC
AGCCAGGCTT GTCTGGTCGG CGGTTATACT TTGCGAGGGA AGCAAGTAAA TGCTCTGTTG
TTGGGTGTTA TGCGTGACGG AAGCTTAAGT TTTGCCGGTA AAGCCAGCAA TGGCCTGGAT
GCAGAGCAAT TGCAAATACT GTCTGAGACC TTGCCCCGAC TGGAAGTAAA GGATTCTCCT
TTTCTCGAGC CGACCCCGGC AGGTTCACAT TATATTACAC CTCAATTGGC AGTAGAGGTT
GAATATCTAG AGTGGACAGA TTCTTTACAC CTTCGCTTTC CGGTGATAAA GTCCTTCATA
AAAAATACGG AAGCTGACTA TAGCGTTTAA
|
|---|
| Protein sequence | MEIFLREIRS MDPINCEQAF DSDDFLYQVK WDGVRMLVAV AGEQVSLLNK RGNLRSRQYP
ELQNLPNLIR ASTAVLDGEI VVLREGKPSF PAVMQRDNCR NPMKIQHLSK TLAISYMVFD
LLYLNGRDLR SASLVDRLSQ LAELFDNQGC LYLVESFSQG TILFDSVQRA GLEGIVAKKK
NSFYRPGKQH DDWFKIKCRC SQACLVGGYT LRGKQVNALL LGVMRDGSLS FAGKASNGLD
AEQLQILSET LPRLEVKDSP FLEPTPAGSH YITPQLAVEV EYLEWTDSLH LRFPVIKSFI
KNTEADYSV
|
|---|
| |