| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_0422 |
|---|
| Symbol | |
|---|
| ID | 4281368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | + |
|---|
| Start bp | 500823 |
|---|
| End bp | 501704 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638137310 |
|---|
| Product | uroporphyrinogen decarboxylase (URO-D) |
|---|
| Protein accession | YP_753131 |
|---|
| Protein GI | 114565977 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTCA GCGGTATTAA CTTTGTCTGC GCAGGCCGGG ATGAACTGGA AATACCCCGG
GAGATTGTAG AGCAGGGAGG ATTTCATTTT CCTGATCTTC ATAGTGACAG TCAGGAAATG
GCGCGGCTGG CTCTGGCTAT AAAGCATAAT AAGCAAAACA GCATCTGCAT GCTGCCGTTT
TGCCTGACGG TGGAGGCCGA AGCGCTGGGT GCCCGGGTGA ATCTCGGCAA TGCAAGCTCA
GGCCCCAGAA TCAGTTCATA TTCATATGAA AGCATTGAGC AGCTTAAAGA TCTGAGGATG
GTGGATTTTA ATTCAGGCAG AATTAAATCA GTGCTTGATG CAGTAGAGAC GTTGACCCAA
AGCGGGGAAG TGGTGGCTCT TAATGTGAGC GGACCCTTTA CTATCATAAC TTCTCTTTTC
GATCCCATGG TCTTATATAA AGCGGTCAAA AAAAACCGGG AAGGGATAGA CGATGTACTA
AGGATAATAG AGGGAATTAT ACTACGTTAT ATCCTTGAAG CGATTAAAAT GGGTGCAAGA
ATTATATCCT ATGCCGATGC GGTCGGTACC GCTGACATGG TTGGGCCCAA GATATACAAA
GATATAGCAG GTATTGCCAG CCTGAATTTG TTAAAGCGAC TTCAGACAAG TGATGAGCTG
GATGGTTGTT TTGTCCATAT CTGCGGCAAA ACCTCGGTAT CTCTGGAAAA TCACGGCTTT
GCAAGGTCGT ATCCGATTGA GGTGAGTTCT AACCAAACCT ATGGCCAGGC TATAACAGAA
TTATTATACA AATCACAAGG CAGCAGATTC ATAGGACACA ATTGCATGAA GAGAACGGTT
AATAAACTAA AGGATAACAC AGTTTGGAGG ATAGAGTTTT AG
|
|---|
| Protein sequence | MSVSGINFVC AGRDELEIPR EIVEQGGFHF PDLHSDSQEM ARLALAIKHN KQNSICMLPF
CLTVEAEALG ARVNLGNASS GPRISSYSYE SIEQLKDLRM VDFNSGRIKS VLDAVETLTQ
SGEVVALNVS GPFTIITSLF DPMVLYKAVK KNREGIDDVL RIIEGIILRY ILEAIKMGAR
IISYADAVGT ADMVGPKIYK DIAGIASLNL LKRLQTSDEL DGCFVHICGK TSVSLENHGF
ARSYPIEVSS NQTYGQAITE LLYKSQGSRF IGHNCMKRTV NKLKDNTVWR IEF
|
|---|
| |