| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4042 |
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| Symbol | |
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| ID | 4280933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4820709 |
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| End bp | 4822802 |
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| Gene Length | 2094 bp |
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| Protein Length | 697 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638136867 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_752706 |
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| Protein GI | 114565192 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.296308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTATTTA AATATTCAGT TATAGGTTTA GCAGTTGGTT CAGCATTAAT GACGATGCCG
GTAATGGCTG AAGTATCTAG TGATACAAAC ATAGAACGTA TTAATGTTGT GGGTCGAACT
TTTAACGATT ATAAAGTCGG TACAGCATCT GGTGCTATGC GCGGTGATAT CGACCTAATG
GATACCCCAC AGTCAGTCAA TGTTATCCCT GATTTTGTCA CCGATGAACA ATTGGCAACT
AACCTTGCTG AAGTATTAGT GAATGATTCA AGTGTAACAG CAGGGACTAC ACGCTGGAAC
CGCCAGGTTT TCAGTATCCG TGGCTTTGAA TTAGATTCTG GTAATGGTTA TTTAATTAAT
GGCCACCAGC AATGGTCTCA CTACATACAA CCTATTGAAA CTCTACAACA AGTTGAAGTG
CTGAAAGGTC CTTCTAGTAT GTTGTATGGC CAATCTGGTC CAGGTGGTTT GGTGAATATG
GTCACCAAAA AGCCGACTTA TGATTCTATG CTTAATGTAG GTGTCGACAC TGATGGTTAC
GGCTCTACCC GTGCACAGAT TGATGCTGGA GGCAGTTTAA ATGATGCCCA AAGTATTCGA
TATCGTGGTG TGTTAGTAAA GCAAGACACA ACATATTGGC GTGAATATTC AACCACAGAA
GAAAACCAAG ATCGTGATCG TTGGTTAGGT TATCTTAATA TGGAATTTGA TTTAACAGAT
GATGTATTGC TATCTGTTAA ATACGATCAC ACTCAAGATA AAGCCAGTAT TGATGCGGGT
GGTTGGTTAG ACTCTCAAGG TAATGTTATA GGCAATAATA AAACTATTTG GGATGCTCCT
TGGGCCTTTA CCGATAATAC GGTTTCAAAT TTAGGTGCAG ATCTTACTTG GCATATTAGT
GACGACTGGA AAATTAAAGC CGGTTATAAC GATCAGCAAT TCAATCGTCA ACGTTTCGAC
TCTGCGCCAC AATATACCAC TGCTCCTTTT AGCAACGGTT ACAGCATTAA ACCATTTGAT
CGCTATGATG ACTGGCAACA TAAAACCGCT TATATCGATT TTACTGGCGA GTTTGATTTT
GCAGGAGTTC AACACCAGTT ATTGATAGGT GCAAACTATC TAGATTATTT ATATCAACAA
CAGATCCAGC GTGGAACAAG CCAAACAGTT ATTCCTGGGC AGCCAGTTAT TAAGCCTGAT
CTTGATTATC ATCTAAGTAG CAAAGGCGAT CCGAGCGAAT ACAAATATTA TGGTTTCTAT
TTACAAGATT TAATGACCGT AAACCAACAT TGGAAGTTGC TTGCTGGTGT ACGTTATGAC
GAGCAAAAGA AAGACGGCTT AGGTCAGAAC AGTTATGCGG TATCGCCTAA GTTTGGGGCT
ATTTACTCGC CAATGGAACA TGGCAGTATT TACGTTAACT ATTCAAAAAG TTTTACTCCA
CAAGGTGCTG TTAATAATCA ATTTGACGTT AACGATGAAC TGGATTTAAA ACCTGAATAT
GGTATTCAGT ACGAAGTGGG TACCAAATGG GAACTGTTTG ACGATAGCTT ATTACTCACT
GCGGCTGTAT TTGATATCAC TGTTGAGAAT ATTACAATAT CTGAAGTATT ACCGACTCCA
ATAGATTCCT ATACTGATAT CACTACCCAA GGTGGTGAGC AGAAACATCG TGGATTTGAA
GTGGGCGCTC AAGGTCAGTT AAGTGACGAT TGGTTCATGA CATCTTCAAT GATGTACCTT
GATGCTGAAT ATCACACGGG TGATGAACGT GAAGGTAAAA CACCTGTTGA TGCGCCGGAA
TGGTCGGCTA ATATCTGGAC TCGCTATGAA ATGACTGAAT ACTTTGCGAT AAACTTTGGT
GCTATCTATG TTGGTGAGCG TTTTGCCAAC ACCGATAACA GTATTAGTAA AGACGGTTAT
ATCCGTTTCG ATATTGGCGC AGCCTATACT ATGGATGTTA TGGGGAAAGA CGTCAGTGTA
CGCGCCAATG TCAGAAATCT ATTCGATACC GACTATATTG AAGGTGGTCA GTATAATATG
GTCACCATTG GCCAAGATCG TAATTTCAGT GTTGCCGCCG AAGTTAAATT CTAA
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| Protein sequence | MVFKYSVIGL AVGSALMTMP VMAEVSSDTN IERINVVGRT FNDYKVGTAS GAMRGDIDLM
DTPQSVNVIP DFVTDEQLAT NLAEVLVNDS SVTAGTTRWN RQVFSIRGFE LDSGNGYLIN
GHQQWSHYIQ PIETLQQVEV LKGPSSMLYG QSGPGGLVNM VTKKPTYDSM LNVGVDTDGY
GSTRAQIDAG GSLNDAQSIR YRGVLVKQDT TYWREYSTTE ENQDRDRWLG YLNMEFDLTD
DVLLSVKYDH TQDKASIDAG GWLDSQGNVI GNNKTIWDAP WAFTDNTVSN LGADLTWHIS
DDWKIKAGYN DQQFNRQRFD SAPQYTTAPF SNGYSIKPFD RYDDWQHKTA YIDFTGEFDF
AGVQHQLLIG ANYLDYLYQQ QIQRGTSQTV IPGQPVIKPD LDYHLSSKGD PSEYKYYGFY
LQDLMTVNQH WKLLAGVRYD EQKKDGLGQN SYAVSPKFGA IYSPMEHGSI YVNYSKSFTP
QGAVNNQFDV NDELDLKPEY GIQYEVGTKW ELFDDSLLLT AAVFDITVEN ITISEVLPTP
IDSYTDITTQ GGEQKHRGFE VGAQGQLSDD WFMTSSMMYL DAEYHTGDER EGKTPVDAPE
WSANIWTRYE MTEYFAINFG AIYVGERFAN TDNSISKDGY IRFDIGAAYT MDVMGKDVSV
RANVRNLFDT DYIEGGQYNM VTIGQDRNFS VAAEVKF
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