| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3998 |
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| Symbol | |
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| ID | 4280889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4766065 |
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| End bp | 4767717 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136819 |
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| Product | hypothetical protein |
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| Protein accession | YP_752662 |
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| Protein GI | 114565148 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
[COG2453] Predicted protein-tyrosine phosphatase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAACCC GTATTCATAT TAAATATTAC TATACTGTTG GCGCGTTATT GGCTTTGTGC
TTATCTGTGG CGCTTCCTTA TATATTTCTT AACGTTGTAT TTGCTTGGAT TGCATTATCT
TTAGGGCTAG TGAGCTCAGC TTATTGGTTT AATAGTGCAG GCATTTTCCG AAAAAGCCAA
GATGGCAGTA TTCCTTGGTA TATCAGTTGG AGTTTTATTC CCTTTTTAAT GGGTTCCCAG
TTGTATAACA CTTGGGCGCG AAAGCACGAC AAAGTACCCG CAATCCAAAA AATTGATAAG
CAGTTGTATT TAGCATGCCG ATTATTTCCC CGTGATATTG ACCGACTTAA ACATGAAAAA
ATTGACGCTA TTTTAGATGT TACTGCTGAA TTTGATGCAT TAGAGTGGAC CTTGATGGAT
GAAAATATTG CCTATTTAAA TATTCCTATC TTAGATCACA GTGTGCCGAC CGTCGCGCAG
TTAAATCAAG CTATCAATTG GTTACACACC CAAGTCAGTA ACGGTAAAAA TGTCGTGGTG
CATTGTGCGT TAGGTCGAGG GCGTTCAGTA TTGGTGTTAG CGGCATATTT AGTCTGTCGT
GAGAAAAATC GTAATGTTAA TGATGTGCTT AAATCCATCA ATAGTATTCG CCAAACGGCA
CGATTAAATA AATGGCAGTT GGCCGCTATA GAAAAAATGC ATAGCCATAA TCAAATCAAT
ATTCACAAAC GCGCTTGGTT AATTGTTAAT CCGGTGTCTG GTGGTGGTAA GTGGAATGAT
GAAGCAGAGC ATATTACCCA AACCTTGACG GATTACTTCC AGCTTGAAGT GTTGTATACC
GCTAAAGATA AGTCGGCCGT GCAGTTAGCC GAACAAGCCA AGCAAAAAGG CGCAGATATC
ATTGTGGCCT GTGGTGGCGA TGGTACGGTT AATGAGGTGG CATCAGTGAT TGTCGATACT
GATATTTACT TAGGTATTAT TCCGATGGGA ACCACCAATG CACTAAGTCA TACTTTGTTT
GGCGCCGCCA GTAAATTGGT GCCGGTGTCG CAAGCGCTTG ATATTTTGAT TCAAGGTTAT
TCACAACGTA TTGATACCGC AAGGTGTAAT GATGAATTGA TGTTGTTGCT GGTGGGACTA
GGCTTTGAGC AGAAAATGAT AGAAAAGGCT GACCGTGACC AAAAAAATGC ATTAGGGCAA
CTGGCTTACC TTAATGGGTT GTGGGAGGCG ATAGACGAAA ATCAGCCATT GTCGATAAGA
GTACAGATTG ATGGTGGCGA TATTCAAGTG ATTAACACCA CCAGTTTAGT GATTGCCAAT
GCTGCGCCTT TTACCAGTTT ATTAGCACTA GGTAATGGTG AGCCCAATAT TAGCGATGGC
TTGTTAGATA TTACCTGGAT TGAGTCGAGC GAGACATCGC CACAACAATT ATTGAGTATG
ACCGAGTTGC TATTTGCTGG ATTAACTGGA GATCGTGAAG ATAATCAAGC GAGTCGAATT
CATCATGAGC AAGCAAAAAC AATTTATTTA AACACGGATT CGTCATGCCA ATATGTGATT
GATGGTGAGT TATTTGAGTC GGAAGATCTG TGCATTAAAG TCAAACCCAA TTCATTAAAT
GTGCTGGTGC CAAAAGCGAG CAAACACGTT TAA
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| Protein sequence | MLTRIHIKYY YTVGALLALC LSVALPYIFL NVVFAWIALS LGLVSSAYWF NSAGIFRKSQ
DGSIPWYISW SFIPFLMGSQ LYNTWARKHD KVPAIQKIDK QLYLACRLFP RDIDRLKHEK
IDAILDVTAE FDALEWTLMD ENIAYLNIPI LDHSVPTVAQ LNQAINWLHT QVSNGKNVVV
HCALGRGRSV LVLAAYLVCR EKNRNVNDVL KSINSIRQTA RLNKWQLAAI EKMHSHNQIN
IHKRAWLIVN PVSGGGKWND EAEHITQTLT DYFQLEVLYT AKDKSAVQLA EQAKQKGADI
IVACGGDGTV NEVASVIVDT DIYLGIIPMG TTNALSHTLF GAASKLVPVS QALDILIQGY
SQRIDTARCN DELMLLLVGL GFEQKMIEKA DRDQKNALGQ LAYLNGLWEA IDENQPLSIR
VQIDGGDIQV INTTSLVIAN AAPFTSLLAL GNGEPNISDG LLDITWIESS ETSPQQLLSM
TELLFAGLTG DREDNQASRI HHEQAKTIYL NTDSSCQYVI DGELFESEDL CIKVKPNSLN
VLVPKASKHV
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